D. rerio Gene: smarcb1b - ENSDARG00000011594 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011594
Namesmarcb1b
DescriptionSWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b [Source:ZFIN;Acc:ZDB-GENE-991008-16]
OrganismDanio rerio (zebrafish)
Synonym(s)fc51b01, smarcb1, wu:fc51b01
Orthologs(s)7 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
508
  • 508
98.30
  • 98.30
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
893
  • 893
  • 1.23e3
  • 1.61e3
  • 1.93e3
  • 2.07e3
  • 2.08e3
  • 2.12e3
  • 2.14e3
  • 2.19e3
  • 3.56e3
97.01
  • 97.01
  • 95.88
  • 94.61
  • 93.54
  • 93.09
  • 93.05
  • 92.91
  • 92.83
  • 92.67
  • 88.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.02e3
  • 1.02e3
  • 1.60e3
  • 2.27e3
  • 1.15e4
96.58
  • 96.58
  • 94.64
  • 92.41
  • 61.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
1.05e3
  • 1.05e3
  • 1.17e3
  • 1.65e3
  • 1.67e3
  • 1.94e3
  • 2.16e3
96.48
  • 96.48
  • 96.10
  • 94.48
  • 94.42
  • 93.52
  • 92.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.34e3
  • 1.34e3
  • 2.06e3
  • 2.25e3
  • 5.64e3
  • 5.79e3
95.50
  • 95.50
  • 93.10
  • 92.47
  • 81.12
  • 80.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.46e3
  • 1.46e3
  • 6.12e3
95.11
  • 95.11
  • 79.50
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
  • 1.62e3
  • 1.79e3
  • 1.85e3
  • 1.88e3
  • 2.09e3
  • 2.21e3
  • 2.23e3
  • 2.71e3
  • 4.26e3
  • 4.35e3
  • 5.03e3
  • 5.43e3
  • 6.69e3
  • 1.12e4
  • 1.44e4
  • 1.50e4
94.73
  • 94.73
  • 94.59
  • 94.02
  • 93.80
  • 93.71
  • 93.01
  • 92.60
  • 92.54
  • 90.93
  • 85.74
  • 85.45
  • 83.15
  • 81.81
  • 77.60
  • 62.35
  • 51.88
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
94.71
  • 94.71
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.21e3
  • 2.21e3
92.60
  • 92.60
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.25e3
  • 2.25e3
  • 7.48e3
92.48
  • 92.48
  • 74.94
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.16e3
  • 3.16e3
89.44
  • 89.44
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.20e3
  • 3.20e3
89.29
  • 89.29
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.47e3
  • 3.47e3
  • 1.08e4
88.38
  • 88.38
  • 63.82
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
88.31
  • 88.31
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.65e3
  • 3.65e3
87.77
  • 87.77
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.81e3
  • 3.81e3
87.25
  • 87.25
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.29e3
  • 4.29e3
  • 1.41e4
85.65
  • 85.65
  • 52.81
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.43e3
  • 4.43e3
  • 4.74e3
  • 5.01e3
85.16
  • 85.16
  • 84.12
  • 83.23
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.62e3
  • 4.62e3
84.53
  • 84.53
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.34e3
  • 5.34e3
82.12
  • 82.12
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.69e3
  • 5.69e3
80.95
  • 80.95
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.82e3
  • 5.82e3
80.52
  • 80.52
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.10e3
  • 6.10e3
79.57
  • 79.57
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.19
  • 79.19
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.79e3
  • 6.79e3
  • 8.51e3
77.27
  • 77.27
  • 71.51
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.06e3
  • 7.06e3
76.36
  • 76.36
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.19e3
  • 7.19e3
75.94
  • 75.94
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
75.81
  • 75.81
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.58e3
  • 7.58e3
74.61
  • 74.61
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.94
  • 63.94
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.76
  • 62.76
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.84
  • 59.84
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000011594.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000011594.

Cross-references

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