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D. rerio Gene: atxn2l - ENSDARG00000011597 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011597
Nameatxn2l
Descriptionataxin 2-like [Source:ZFIN;Acc:ZDB-GENE-030131-3246]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fc31f08, wu:fi19h05, zgc:66471
Orthologs(s)4 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
949
  • 949
  • 1.32e3
  • 1.68e3
  • 4.13e3
  • 4.17e3
96.83
  • 96.83
  • 95.58
  • 94.39
  • 86.19
  • 86.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.00e3
  • 1.00e3
  • 1.79e3
  • 2.18e3
  • 2.32e3
  • 2.89e3
  • 3.32e3
96.65
  • 96.65
  • 94.00
  • 92.72
  • 92.25
  • 90.33
  • 88.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
96.53
  • 96.53
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.52e3
  • 1.52e3
94.92
  • 94.92
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.70e3
  • 1.70e3
94.30
  • 94.30
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.79e3
  • 1.79e3
  • 2.14e3
  • 2.29e3
  • 2.33e3
  • 2.34e3
  • 2.34e3
  • 2.45e3
  • 2.47e3
  • 2.60e3
  • 2.64e3
  • 2.68e3
  • 2.82e3
  • 2.85e3
  • 3.06e3
  • 1.29e4
  • 1.47e4
94.02
  • 94.02
  • 92.85
  • 92.34
  • 92.19
  • 92.18
  • 92.18
  • 91.81
  • 91.73
  • 91.30
  • 91.18
  • 91.04
  • 90.55
  • 90.44
  • 89.76
  • 56.79
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.83e3
  • 1.83e3
93.89
  • 93.89
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.17e3
  • 2.17e3
  • 6.83e3
92.74
  • 92.74
  • 77.15
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.29e3
  • 2.29e3
92.32
  • 92.32
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
2.37e3
  • 2.37e3
  • 2.96e3
  • 3.36e3
  • 3.50e3
  • 3.64e3
  • 4.18e3
  • 4.38e3
  • 4.66e3
  • 5.71e3
  • 8.52e3
92.07
  • 92.07
  • 90.09
  • 88.74
  • 88.29
  • 87.83
  • 86.02
  • 85.32
  • 84.40
  • 80.87
  • 71.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.25e3
  • 3.25e3
89.14
  • 89.14
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.37e3
  • 3.37e3
88.72
  • 88.72
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.51e3
  • 3.51e3
88.26
  • 88.26
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
88.16
  • 88.16
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.58e3
  • 3.58e3
88.00
  • 88.00
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
3.59e3
  • 3.59e3
  • 5.68e3
  • 5.76e3
  • 6.36e3
87.98
  • 87.98
  • 80.98
  • 80.70
  • 78.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.26
  • 87.26
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.06e3
  • 4.06e3
  • 5.89e3
  • 7.76e3
86.41
  • 86.41
  • 80.29
  • 74.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.53e3
  • 4.53e3
84.84
  • 84.84
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.56e3
  • 4.56e3
84.72
  • 84.72
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
83.61
  • 83.61
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
83.59
  • 83.59
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.07e3
  • 5.07e3
83.02
  • 83.02
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.13e3
  • 5.13e3
82.83
  • 82.83
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.33e3
  • 5.33e3
  • 5.47e3
82.15
  • 82.15
  • 81.69
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.39e3
  • 5.39e3
81.95
  • 81.95
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.51e3
  • 5.51e3
81.54
  • 81.54
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.21
  • 80.21
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.04e3
  • 7.04e3
  • 7.87e3
76.41
  • 76.41
  • 73.64
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.52e3
  • 7.52e3
74.81
  • 74.81
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.71e3
  • 8.71e3
70.84
  • 70.84
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.28e3
  • 9.28e3
68.92
  • 68.92
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
55.99
  • 55.99
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.50e4
55.16
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000011597.

Cross-references

EnsemblENSDARG00000011597 (atxn2l)
ZFINZDB-GENE-030131-3246 (atxn2l)
EMBLBX784026
Uniprot/SPTREMBLF1QA42, F1QA42_DANRE

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