D. rerio Gene: scxb - ENSDARG00000011635 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011635
Namescxb
Descriptionscleraxis bHLH transcription factor b [Source:ZFIN;Acc:ZDB-GENE-090806-1]
OrganismDanio rerio (zebrafish)
Synonym(s)sclerax1, si:ch211-251p5.3
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.23
  • 53.23
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.79e4
  • 1.79e4
  • 2.02e4
40.02
  • 40.02
  • 32.24
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.52
  • 37.52
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.93e4
  • 1.93e4
  • 2.20e4
35.34
  • 35.34
  • 26.27
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.14e4
  • 2.14e4
28.27
  • 28.27
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.32
  • 26.32
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.26e4
  • 2.26e4
24.36
  • 24.36
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.31e4
  • 2.31e4
22.63
  • 22.63
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000011635.

Cross-references

EnsemblENSDARG00000011635 (scxb)
ZFINZDB-GENE-090806-1 (scxb)
EMBLCR626923
Uniprot/SPTREMBLE7F361, E7F361_DANRE

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