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D. rerio Gene: syt5b - ENSDARG00000011640 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011640
Namesyt5b
Descriptionsynaptotagmin Vb [Source:ZFIN;Acc:ZDB-GENE-050522-134]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:109988
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
267
  • 267
  • 1.02e4
  • 1.05e4
99.11
  • 99.11
  • 65.89
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
428
  • 428
  • 7.72e3
98.57
  • 98.57
  • 74.17
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
995
  • 995
  • 3.30e3
  • 1.77e4
  • 1.85e4
  • 1.90e4
96.67
  • 96.67
  • 88.97
  • 40.90
  • 38.08
  • 36.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.11e3
  • 1.11e3
  • 1.48e4
96.27
  • 96.27
  • 50.51
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.35e3
  • 4.35e3
85.43
  • 85.43
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.64e3
  • 5.64e3
81.12
  • 81.12
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 1.02e4
  • 1.06e4
  • 1.08e4
  • 1.08e4
  • 1.10e4
  • 1.10e4
  • 1.12e4
75.00
  • 75.00
  • 65.77
  • 64.56
  • 63.87
  • 63.87
  • 63.14
  • 63.14
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
9.33e3
  • 9.33e3
  • 9.44e3
  • 9.96e3
  • 9.96e3
  • 1.03e4
  • 1.03e4
  • 1.07e4
  • 1.08e4
68.74
  • 68.74
  • 68.40
  • 66.65
  • 66.65
  • 65.61
  • 65.61
  • 64.26
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.04e4
  • 1.04e4
  • 1.06e4
  • 1.09e4
  • 1.10e4
  • 1.10e4
  • 1.14e4
  • 1.16e4
  • 1.28e4
65.19
  • 65.19
  • 64.56
  • 63.61
  • 63.14
  • 63.02
  • 61.75
  • 61.09
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.50e4
59.12
  • 59.12
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.67e4
  • 1.67e4
44.22
  • 44.22
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.35e4
  • 2.35e4
21.37
  • 21.37
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Metazoa4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000011640.

Cross-references

EnsemblENSDARG00000011640 (syt5b)
ZFINZDB-GENE-050522-134 (syt5b)
EMBLCT573322
Uniprot/SPTREMBLF1QCC9, F1QCC9_DANRE

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