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D. rerio Gene: pde6b - ENSDARG00000011671 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011671
Namepde6b
Descriptionphosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
OrganismDanio rerio (zebrafish)
Orthologs(s)17 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.58e3
  • 1.58e3
  • 6.97e3
94.71
  • 94.71
  • 76.66
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
2.57e3
  • 2.57e3
91.39
  • 91.39
AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
8.19e3
  • 8.19e3
  • 1.86e4
  • 1.98e4
  • 2.26e4
72.59
  • 72.59
  • 37.80
  • 33.74
  • 24.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.26e4
  • 1.26e4
  • 1.40e4
57.91
  • 57.91
  • 53.00
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.39e4
  • 1.39e4
  • 2.15e4
53.58
  • 53.58
  • 28.13
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.47e4
  • 1.47e4
50.87
  • 50.87
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.77
  • 48.77
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.55e4
  • 1.55e4
  • 1.59e4
48.07
  • 48.07
  • 46.90
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.49
  • 45.49
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.06
  • 40.06
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.07
  • 38.07
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.23
  • 37.23
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.63
  • 36.63
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.21
  • 28.21
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.74
  • 26.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000011671.

Cross-references

EnsemblENSDARG00000011671 (pde6b)
ZFINZDB-GENE-090421-2 (pde6b)
EMBLAL844141
Uniprot/SPTREMBLE7F5I9, E7F5I9_DANRE

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