D. rerio Gene: si:ch211-246m6.5 - ENSDARG00000011673 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011673
Namesi:ch211-246m6.5
Descriptionsi:ch211-246m6.5 [Source:ZFIN;Acc:ZDB-GENE-050208-577]
OrganismDanio rerio (zebrafish)
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.43e3
  • 1.43e3
95.21
  • 95.21
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.69e3
  • 1.69e3
94.35
  • 94.35
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
  • 1.35e4
93.22
  • 93.22
  • 54.85
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.43e3
  • 3.43e3
88.52
  • 88.52
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.30e3
  • 4.30e3
  • 1.25e4
85.61
  • 85.61
  • 58.25
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
5.33e3
  • 5.33e3
  • 5.64e3
  • 5.76e3
  • 8.82e3
  • 9.28e3
  • 1.04e4
  • 1.07e4
  • 1.20e4
  • 1.27e4
  • 1.40e4
82.17
  • 82.17
  • 81.10
  • 80.73
  • 70.46
  • 68.94
  • 65.09
  • 64.22
  • 59.79
  • 57.32
  • 53.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.40e3
  • 6.40e3
78.57
  • 78.57
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.50e3
  • 7.50e3
74.90
  • 74.90
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.17e3
  • 8.17e3
72.63
  • 72.63
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
8.47e3
  • 8.47e3
  • 1.34e4
  • 1.37e4
  • 1.70e4
  • 1.75e4
71.63
  • 71.63
  • 55.22
  • 54.18
  • 42.99
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.80e3
  • 8.80e3
70.54
  • 70.54
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
9.30e3
  • 9.30e3
  • 1.28e4
  • 1.29e4
  • 1.29e4
  • 1.34e4
  • 1.35e4
  • 1.35e4
  • 1.35e4
  • 1.35e4
  • 1.36e4
  • 1.49e4
  • 1.51e4
68.86
  • 68.86
  • 57.06
  • 56.97
  • 56.85
  • 55.01
  • 54.95
  • 54.73
  • 54.73
  • 54.69
  • 54.62
  • 50.22
  • 49.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.46e3
  • 9.46e3
68.33
  • 68.33
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.07e4
  • 1.07e4
  • 1.13e4
  • 1.39e4
64.29
  • 64.29
  • 62.32
  • 53.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
1.17e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.39e4
60.96
  • 60.96
  • 60.87
  • 60.78
  • 53.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.89e4
59.16
  • 59.16
  • 36.60
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.62
  • 56.62
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
  • 1.88e4
54.10
  • 54.10
  • 37.00
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.36
  • 53.36
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.40e4
  • 1.40e4
53.21
  • 53.21
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.33
  • 52.33
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.54
  • 51.54
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.19
  • 49.19
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.00
  • 47.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.51
  • 43.51
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.93
  • 40.93
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.33
  • 40.33
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.05
  • 28.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000011673.

Cross-references

EnsemblENSDARG00000011673 (si:ch211-246m6.5)
ZFINZDB-GENE-050208-577 (si:ch211-246m6.5)
Uniprot/SPTREMBLF1QE74, F1QE74_DANRE

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