D. rerio Gene: clocka - ENSDARG00000011703 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011703
Nameclocka
Descriptionclock circadian regulator a [Source:ZFIN;Acc:ZDB-GENE-990630-14]
OrganismDanio rerio (zebrafish)
Synonym(s)clk1, clock, clock1a, zclock1, zfclock1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.48735
  • 54.48735
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.10407
  • 54.10407
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
53.72894
  • 53.72894
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
53.64673
  • 53.64673
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
  • 1.51e4
  • 1.53e4
  • 1.56e4
52.53168
  • 52.53168
  • 48.96551
  • 48.40943
  • 47.20247
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.41e4
  • 1.41e4
  • 1.58e4
  • 1.63e4
  • 1.63e4
  • 1.80e4
52.45226
  • 52.45226
  • 46.60403
  • 44.92421
  • 44.92319
  • 39.08925
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
  • 1.84e4
52.32508
  • 52.32508
  • 37.97171
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.21071
  • 52.21071
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.47e4
  • 1.47e4
  • 1.54e4
  • 1.68e4
50.29145
  • 50.29145
  • 47.79180
  • 43.11456
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
48.78745
  • 48.78745
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.08497
  • 48.08497
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.07767
  • 48.07767
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.55e4
  • 1.55e4
47.47716
  • 47.47716
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.58375
  • 46.58375
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
44.74845
  • 44.74845
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
42.86583
  • 42.86583
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.22418
  • 41.22418
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
40.96970
  • 40.96970
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.61773
  • 39.61773
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.23153
  • 37.23153
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX088688
EnsemblENSDARG00000011703 (clocka)
Uniprot/SPTREMBLQ5RIV1, Q5RIV1_DANRE
ZFINZDB-GENE-990630-14 (clocka)

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