D. rerio Gene: clocka - ENSDARG00000011703 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011703
Nameclocka
Descriptionclock circadian regulator a [Source:ZFIN;Acc:ZDB-GENE-990630-14]
OrganismDanio rerio (zebrafish)
Synonym(s)clk1, clock, clock1a, zclock1, zfclock1
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.42e3
  • 3.42e3
88.55
  • 88.55
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
1.03e4
  • 1.03e4
  • 1.26e4
  • 1.40e4
65.62
  • 65.62
  • 57.96
  • 53.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.11e4
  • 1.11e4
62.92
  • 62.92
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.12
  • 58.12
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.31e4
  • 1.31e4
  • 1.49e4
  • 1.50e4
56.22
  • 56.22
  • 50.27
  • 49.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.64
  • 55.64
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.75
  • 53.75
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.41e4
  • 1.41e4
  • 1.58e4
  • 1.63e4
  • 1.74e4
  • 1.80e4
52.80
  • 52.80
  • 47.10
  • 45.43
  • 41.77
  • 39.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
  • 1.84e4
52.76
  • 52.76
  • 38.55
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.65
  • 52.65
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.41e4
  • 1.41e4
  • 1.50e4
  • 1.52e4
  • 1.52e4
  • 1.54e4
  • 1.57e4
52.63
  • 52.63
  • 49.78
  • 49.08
  • 49.08
  • 48.52
  • 47.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
  • 1.55e4
50.93
  • 50.93
  • 48.08
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.26
  • 49.26
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.68
  • 48.68
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.56
  • 48.56
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.34
  • 48.34
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.55e4
  • 1.55e4
47.96
  • 47.96
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.56e4
  • 1.56e4
  • 1.70e4
  • 1.72e4
47.90
  • 47.90
  • 43.10
  • 42.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.08
  • 47.08
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.79
  • 45.79
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.26
  • 45.26
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.23
  • 45.23
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.52
  • 41.52
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.18
  • 40.18
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.81
  • 37.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000011703.

Cross-references

EnsemblENSDARG00000011703 (clocka)
ZFINZDB-GENE-990630-14 (clocka)
EMBLBX088688
Uniprot/SPTREMBLQ5RIV1, Q5RIV1_DANRE

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