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D. rerio Gene: foxn1 - ENSDARG00000011879 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011879
Namefoxn1
Descriptionforkhead box N1 [Source:ZFIN;Acc:ZDB-GENE-021008-1]
OrganismDanio rerio (zebrafish)
Synonym(s)nude, whnb

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005562thymus primordium
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
3.73e3
  • 3.73e3
  • 4.98e3
  • 1.49e4
87.50
  • 87.50
  • 83.34
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000043Juvenile:Days 45-89
6.40e3
  • 6.40e3
  • 7.47e3
  • 9.33e3
  • 1.12e4
  • 1.49e4
78.57
  • 78.57
  • 75.00
  • 68.74
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
9.34e3
  • 9.34e3
  • 1.42e4
68.74
  • 68.74
  • 52.60
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.81
  • 61.81
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.25e4
  • 1.25e4
58.15
  • 58.15
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.26e4
  • 1.26e4
57.70
  • 57.70
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.02
  • 53.02
AEIR
  • AEIR
UBERON:0003846thymus epithelium
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.22
  • 42.22
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.04
  • 38.04
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
1.86e4
  • 1.86e4
  • 2.09e4
  • 2.21e4
37.82
  • 37.82
  • 30.06
  • 25.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.01e4
  • 2.01e4
  • 2.23e4
32.74
  • 32.74
  • 25.43
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.91
  • 31.91
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.33
  • 30.33
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.81
  • 29.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000011879 (foxn1)
ZFINZDB-GENE-021008-1 (foxn1)
EMBLBX663513
Uniprot/SPTREMBLF1R9K2, F1R9K2_DANRE

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