D. rerio Gene: pdca - ENSDARG00000011886 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011886
Namepdca
Descriptionphosducin a [Source:ZFIN;Acc:ZDB-GENE-031023-1]
OrganismDanio rerio (zebrafish)
Synonym(s)pdc, pdc1, pdcb1, pdcr

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
147
  • 147
  • 1.24e4
99.50532
  • 99.50532
  • 57.96191
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.65e3
  • 1.65e3
  • 5.60e3
94.41637
  • 94.41637
  • 81.07362
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
9.75e3
  • 9.75e3
  • 1.77e4
  • 1.77e4
  • 2.26e4
  • 2.33e4
  • 2.33e4
67.05727
  • 67.05727
  • 40.27188
  • 40.13929
  • 23.76637
  • 21.40334
  • 21.34588
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.27e4
  • 1.27e4
  • 1.37e4
  • 1.46e4
  • 1.60e4
  • 1.71e4
  • 1.76e4
  • 1.77e4
  • 1.77e4
  • 1.80e4
57.16116
  • 57.16116
  • 53.53800
  • 50.68197
  • 46.08372
  • 42.10002
  • 40.43013
  • 40.25570
  • 40.05343
  • 39.29189
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
54.82490
  • 54.82490
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.37e4
  • 1.37e4
53.78247
  • 53.78247
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
50.81083
  • 50.81083
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.10692
  • 47.10692
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.60e4
  • 1.60e4
  • 1.62e4
  • 1.64e4
45.77436
  • 45.77436
  • 45.22228
  • 44.49685
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.65e4
  • 1.65e4
  • 1.73e4
44.19671
  • 44.19671
  • 41.61885
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.79e4
  • 1.79e4
39.61780
  • 39.61780
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.22630
  • 33.22630
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLCU570979
EnsemblENSDARG00000011886 (pdca)
Uniprot/SPTREMBLF8W512, F8W512_DANRE
ZFINZDB-GENE-031023-1 (pdca)

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