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D. rerio Gene: spns1 - ENSDARG00000011925 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011925
Namespns1
Descriptionspinster homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-020228-1]
OrganismDanio rerio (zebrafish)
Synonym(s)etid64740.3, not really started, nrs, spinl, wu:fb95b12, wu:fi37e11
Orthologs(s)26 orthologs
Paralog(s)32 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
359
  • 359
98.80
  • 98.80
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
492
  • 492
98.35
  • 98.35
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
814
  • 814
  • 978
  • 1.83e3
  • 7.74e3
  • 8.34e3
97.28
  • 97.28
  • 96.73
  • 93.89
  • 74.08
  • 72.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.49e3
  • 1.49e3
  • 3.58e3
  • 3.83e3
  • 4.02e3
  • 4.51e3
  • 6.31e3
95.03
  • 95.03
  • 88.02
  • 87.17
  • 86.53
  • 84.91
  • 78.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
2.10e3
  • 2.10e3
  • 2.16e3
  • 2.40e3
  • 2.50e3
  • 2.63e3
  • 3.11e3
  • 3.83e3
  • 3.87e3
  • 3.89e3
  • 4.29e3
92.97
  • 92.97
  • 92.76
  • 91.97
  • 91.62
  • 91.20
  • 89.58
  • 87.18
  • 87.03
  • 86.96
  • 85.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
2.28e3
  • 2.28e3
  • 3.86e3
  • 4.53e3
  • 5.06e3
  • 5.09e3
  • 5.78e3
  • 6.42e3
  • 6.86e3
  • 6.92e3
  • 7.04e3
  • 7.22e3
  • 7.46e3
  • 8.23e3
  • 1.00e4
  • 1.03e4
  • 1.39e4
  • 1.44e4
  • 1.47e4
  • 1.49e4
92.38
  • 92.38
  • 87.07
  • 84.82
  • 83.04
  • 82.96
  • 80.65
  • 78.52
  • 77.04
  • 76.83
  • 76.43
  • 75.82
  • 75.01
  • 72.45
  • 66.53
  • 65.61
  • 53.30
  • 51.82
  • 50.90
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.29e3
  • 2.29e3
  • 2.48e3
  • 3.66e3
92.34
  • 92.34
  • 91.70
  • 87.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.32e3
  • 2.32e3
92.22
  • 92.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
91.80
  • 91.80
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.85e3
  • 2.85e3
  • 5.11e3
90.45
  • 90.45
  • 82.88
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.17e3
  • 3.17e3
89.38
  • 89.38
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.38e3
  • 3.38e3
88.68
  • 88.68
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.40e3
  • 3.40e3
88.63
  • 88.63
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
3.45e3
  • 3.45e3
  • 4.08e3
  • 5.03e3
  • 1.05e4
88.44
  • 88.44
  • 86.35
  • 83.16
  • 64.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.91e3
  • 3.91e3
86.92
  • 86.92
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.06e3
  • 4.06e3
86.40
  • 86.40
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
86.31
  • 86.31
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.15e3
  • 4.15e3
86.11
  • 86.11
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.19e3
  • 4.19e3
85.96
  • 85.96
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.32e3
  • 4.32e3
85.53
  • 85.53
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.49e3
  • 4.49e3
84.98
  • 84.98
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.49e3
  • 4.49e3
  • 5.21e3
84.98
  • 84.98
  • 82.55
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
5.19e3
  • 5.19e3
  • 6.57e3
  • 1.21e4
82.63
  • 82.63
  • 78.00
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.39e3
  • 5.39e3
  • 5.62e3
81.95
  • 81.95
  • 81.17
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.20
  • 81.20
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.86e3
  • 5.86e3
80.37
  • 80.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.13e3
  • 6.13e3
79.47
  • 79.47
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.14e3
  • 6.14e3
79.44
  • 79.44
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.29e3
  • 6.29e3
78.95
  • 78.95
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
8.54e3
  • 8.54e3
  • 8.96e3
  • 9.96e3
  • 1.14e4
  • 1.20e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
71.42
  • 71.42
  • 69.99
  • 66.66
  • 61.88
  • 59.98
  • 58.80
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.85
  • 65.85
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.23e4
  • 1.23e4
  • 1.31e4
  • 1.32e4
  • 1.32e4
59.98
  • 59.98
  • 58.80
  • 58.80
  • 56.23
  • 55.86
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria23 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000011925.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000011925 (spns1)
ZFINZDB-GENE-020228-1 (spns1)
EMBLBX784026
Uniprot/SPTREMBLE9QH48, E9QH48_DANRE, G1K2F4, G1K2F4_DANRE

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