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D. rerio Gene: dlx4a - ENSDARG00000011956 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011956
Namedlx4a
Descriptiondistal-less homeobox 4a [Source:ZFIN;Acc:ZDB-GENE-980526-73]
OrganismDanio rerio (zebrafish)
Synonym(s)dlx8
Orthologs(s)1 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
94.72
  • 94.72
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.46e3
  • 5.46e3
81.70
  • 81.70
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.81e3
  • 5.81e3
  • 6.17e3
80.56
  • 80.56
  • 79.34
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.31e3
  • 6.31e3
  • 9.00e3
  • 1.05e4
78.88
  • 78.88
  • 69.85
  • 64.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.54e3
  • 6.54e3
  • 1.03e4
  • 1.05e4
  • 1.15e4
  • 1.16e4
  • 1.19e4
  • 1.36e4
  • 1.39e4
  • 1.39e4
78.12
  • 78.12
  • 65.61
  • 64.69
  • 61.53
  • 61.09
  • 60.00
  • 54.53
  • 53.55
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
7.34e3
  • 7.34e3
  • 9.11e3
  • 1.06e4
  • 1.07e4
  • 1.12e4
  • 1.17e4
  • 1.20e4
  • 1.28e4
  • 1.29e4
  • 1.39e4
75.41
  • 75.41
  • 69.50
  • 64.38
  • 64.05
  • 62.50
  • 60.88
  • 59.74
  • 57.28
  • 56.94
  • 53.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000250opercle
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000038Larval:Day 6
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000692symplectic
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
  • ZFS:0000039Larval:Days 7-13
7.47e3
  • 7.47e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
75.00
  • 75.00
  • 66.67
  • 66.67
  • 66.67
  • 66.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001143tooth 4V
  • ZFS:0000038Larval:Day 6
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.12e4
75.00
  • 75.00
  • 75.00
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.17e3
  • 8.17e3
72.65
  • 72.65
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.19e3
  • 8.19e3
  • 2.35e4
72.57
  • 72.57
  • 21.17
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
9.90e3
  • 9.90e3
  • 1.03e4
  • 1.21e4
  • 1.24e4
  • 1.25e4
  • 1.25e4
  • 1.29e4
  • 1.33e4
  • 1.37e4
  • 1.42e4
  • 1.45e4
  • 1.46e4
  • 1.50e4
  • 1.51e4
  • 1.59e4
66.85
  • 66.85
  • 65.61
  • 59.40
  • 58.37
  • 58.17
  • 58.03
  • 56.95
  • 55.42
  • 53.99
  • 52.46
  • 51.34
  • 51.01
  • 49.81
  • 49.46
  • 46.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004744articular/anguloarticular
  • ZFS:0000036Larval:Day 4
  • ZFS:0000038Larval:Day 6
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000039Larval:Days 7-13
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011606hyomandibular bone
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.03e4
  • 1.03e4
  • 1.59e4
  • 1.75e4
65.56
  • 65.56
  • 46.70
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002397maxilla
  • ZFS:0000036Larval:Day 4
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001280branchiostegal ray 3
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
  • 1.25e4
59.95
  • 59.95
  • 58.05
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.23e4
  • 1.23e4
58.80
  • 58.80
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
  • 1.97e4
51.67
  • 51.67
  • 33.88
AEIR
  • AEIR
  • AEIR
UBERON:0006597quadrate bone
  • ZFS:0000038Larval:Day 6
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000039Larval:Days 7-13
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000422retroarticular
  • ZFS:0000038Larval:Day 6
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001281branchiostegal ray 2
  • ZFS:0000038Larval:Day 6
  • ZFS:0000037Larval:Day 5
  • ZFS:0000039Larval:Days 7-13
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002244premaxilla
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000040Larval:Days 14-20
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0011150pharyngeal arch derived gill
  • ZFS:0000039Larval:Days 7-13
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0000165mouth
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004742dentary
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.15
  • 47.15
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.74
  • 38.74
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.75
  • 34.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000011956.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000011956.

Cross-references

EnsemblENSDARG00000011956 (dlx4a)
ZFINZDB-GENE-980526-73 (dlx4a)
EMBLAL590145, U67846
Uniprot/SWISSPROTDLX4A_DANRE, Q98879

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