D. rerio Gene: dnaaf1 - ENSDARG00000012030 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012030
Namednaaf1
Descriptiondynein, axonemal, assembly factor 1 [Source:ZFIN;Acc:ZDB-GENE-031114-4]
OrganismDanio rerio (zebrafish)
Synonym(s)loc123872, lrrc50, switch hitter, swt, unm tm317b, zgc:56169

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
966
  • 966
96.77
  • 96.77
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.45e3
  • 3.45e3
88.47
  • 88.47
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.29e3
  • 8.29e3
  • 1.62e4
72.25
  • 72.25
  • 45.72
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.39
  • 65.39
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.10
  • 62.10
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
1.17e4
  • 1.17e4
  • 1.25e4
  • 1.66e4
60.92
  • 60.92
  • 58.09
  • 44.32
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000023forerunner cell group (Danio)
  • ZFS:0000021Gastrula:90%-epiboly
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.32e4
  • 1.32e4
55.93
  • 55.93
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
1.34e4
  • 1.34e4
  • 1.49e4
54.97
  • 54.97
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000025Segmentation:10-13 somites
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.91
  • 53.91
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000027Segmentation:20-25 somites
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000027Segmentation:20-25 somites
1.42e4
  • 1.42e4
52.47
  • 52.47
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.15
  • 51.15
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
1.47e4
  • 1.47e4
  • 1.55e4
  • 1.59e4
  • 1.61e4
  • 1.80e4
  • 1.83e4
50.74
  • 50.74
  • 48.03
  • 46.60
  • 46.16
  • 39.76
  • 38.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.69e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.81e4
50.25
  • 50.25
  • 43.50
  • 40.87
  • 40.56
  • 40.55
  • 40.38
  • 40.18
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0010202lateral line
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
  • 1.80e4
  • 1.93e4
49.99
  • 49.99
  • 39.86
  • 35.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.56
  • 46.56
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.11
  • 46.11
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.63e4
  • 1.63e4
  • 1.66e4
  • 1.75e4
45.47
  • 45.47
  • 44.45
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.68e4
  • 1.68e4
  • 1.78e4
43.65
  • 43.65
  • 40.48
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.85
  • 37.85
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
34.95
  • 34.95
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.96
  • 31.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000012030 (dnaaf1)
ZFINZDB-GENE-031114-4 (dnaaf1)
EMBLCR376738
Uniprot/SPTREMBLF1Q654, F1Q654_DANRE, F1R9Z8, F1R9Z8_DANRE

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