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D. rerio Gene: thbs3b - ENSDARG00000012060 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012060
Namethbs3b
Descriptionthrombospondin 3b [Source:ZFIN;Acc:ZDB-GENE-060503-84]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-81h8.2, tsp-3b
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.38e3
  • 9.38e3
  • 9.40e3
68.60
  • 68.60
  • 68.53
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
9.66e3
  • 9.66e3
  • 9.80e3
  • 1.02e4
  • 1.05e4
  • 1.06e4
67.66
  • 67.66
  • 67.19
  • 65.95
  • 64.99
  • 64.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.00e4
  • 1.00e4
66.45
  • 66.45
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.70
  • 65.70
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.44e4
59.19
  • 59.19
  • 51.79
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.22
  • 54.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.25
  • 52.25
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.00
  • 51.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.31
  • 50.31
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.76
  • 49.76
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.60e4
  • 1.60e4
46.47
  • 46.47
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.41
  • 41.41
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.36
  • 40.36
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
  • 2.28e4
39.43
  • 39.43
  • 23.78
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.78
  • 38.78
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.83
  • 27.83
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000012060.

Cross-references

EnsemblENSDARG00000012060 (thbs3b)
ZFINZDB-GENE-060503-84 (thbs3b)
EMBLBC163250, CR749746
Uniprot/SPTREMBLB3DIU2, B3DIU2_DANRE
Uniprot/SWISSPROTQ1L8P7, TSP3B_DANRE

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