D. rerio Gene: angptl1a - ENSDARG00000012071 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012071
Nameangptl1a
Descriptionangiopoietin-like 1a [Source:ZFIN;Acc:ZDB-GENE-040724-269]
OrganismDanio rerio (zebrafish)
Synonym(s)angptl1, si:ch211-195o19.1
Orthologs(s)19 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.72e3
  • 1.72e3
94.26
  • 94.26
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
91.61
  • 91.61
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.60e3
  • 2.60e3
91.29
  • 91.29
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.95
  • 86.95
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.12e3
  • 5.12e3
  • 1.41e4
82.88
  • 82.88
  • 52.78
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.55e3
  • 5.55e3
81.42
  • 81.42
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.61e3
  • 7.61e3
74.53
  • 74.53
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.91e3
  • 8.91e3
  • 1.64e4
70.18
  • 70.18
  • 45.03
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
9.18e3
  • 9.18e3
69.27
  • 69.27
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.03e4
  • 1.03e4
  • 1.44e4
65.44
  • 65.44
  • 51.64
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.90
  • 63.90
AEIR
  • AEIR
UBERON:0003089sclerotome
  • ZFS:0000028Segmentation:26+ somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.09
  • 58.09
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.34e4
  • 1.34e4
  • 1.41e4
  • 1.91e4
  • 2.08e4
  • 2.11e4
55.30
  • 55.30
  • 52.66
  • 35.94
  • 30.43
  • 29.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000028Segmentation:26+ somites
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.41
  • 48.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.66
  • 47.66
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.61e4
  • 1.61e4
46.11
  • 46.11
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.65
  • 44.65
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.31
  • 43.31
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000012071.

Cross-references

EnsemblENSDARG00000012071 (angptl1a)
ZFINZDB-GENE-040724-269 (angptl1a)
EMBLBX571854
Uniprot/SPTREMBLF1QRN9, F1QRN9_DANRE, Q5RH53, Q5RH53_DANRE

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