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D. rerio Gene: apoa1a - ENSDARG00000012076 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012076
Nameapoa1a
Descriptionapolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
OrganismDanio rerio (zebrafish)
Synonym(s)apoa, apoa1, cb49, etid309895.5, etid32161.5, q5xj38, wu:fb33f01, zgc:103718
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
30.0
  • 30.0
99.90
  • 99.90
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
32.5
  • 32.5
  • 68.3
  • 86.0
99.89
  • 99.89
  • 99.77
  • 99.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
34.5
  • 34.5
  • 34.5
  • 42.0
  • 47.3
  • 113
  • 190
  • 220
  • 376
  • 443
  • 456
  • 615
  • 1.00e3
  • 6.57e3
99.89
  • 99.89
  • 99.89
  • 99.86
  • 99.84
  • 99.63
  • 99.37
  • 99.27
  • 98.75
  • 98.52
  • 98.48
  • 97.95
  • 96.65
  • 78.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
38.0
  • 38.0
  • 44.2
  • 46.0
  • 47.4
  • 59.4
  • 61.1
  • 125
  • 183
  • 187
  • 358
99.88
  • 99.88
  • 99.86
  • 99.85
  • 99.84
  • 99.80
  • 99.80
  • 99.58
  • 99.39
  • 99.38
  • 98.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
171
  • 171
  • 524
  • 771
  • 2.39e3
  • 2.49e3
  • 4.67e3
99.43
  • 99.43
  • 98.25
  • 97.42
  • 92.00
  • 91.66
  • 84.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
182
  • 182
99.39
  • 99.39
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
239
  • 239
99.20
  • 99.20
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
241
  • 241
  • 1.40e4
99.20
  • 99.20
  • 52.98
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
251
  • 251
99.16
  • 99.16
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
675
  • 675
  • 6.87e3
97.74
  • 97.74
  • 76.99
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.12e3
  • 2.12e3
92.89
  • 92.89
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.21e3
  • 3.21e3
89.25
  • 89.25
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.07e3
  • 6.07e3
79.69
  • 79.69
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.46e3
  • 6.46e3
78.37
  • 78.37
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.55e3
  • 6.55e3
  • 1.61e4
78.06
  • 78.06
  • 46.20
AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 1.03e4
  • 1.07e4
  • 1.10e4
  • 1.14e4
  • 1.15e4
  • 1.17e4
  • 1.17e4
  • 1.20e4
  • 1.20e4
  • 1.20e4
  • 1.23e4
  • 1.32e4
  • 1.32e4
  • 1.39e4
  • 1.39e4
  • 1.41e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 65.61
  • 64.28
  • 63.32
  • 61.75
  • 61.53
  • 60.70
  • 60.70
  • 59.98
  • 59.98
  • 59.98
  • 58.80
  • 55.86
  • 55.86
  • 53.55
  • 53.55
  • 52.92
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.46e3
  • 9.46e3
68.34
  • 68.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.65e3
  • 9.65e3
67.69
  • 67.69
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.76
  • 58.76
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.70
  • 57.70
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.34e4
  • 1.34e4
  • 1.81e4
55.23
  • 55.23
  • 39.32
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.71
  • 50.71
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.37
  • 48.37
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.85
  • 43.85
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.09
  • 37.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000012076.

Cross-references

EnsemblENSDARG00000012076 (apoa1a)
ZFINZDB-GENE-990415-14 (apoa1a)
EMBLBC083473, Y13653
Uniprot/SWISSPROTAPOA1_DANRE, O42363

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