Gene: cnga1 - ENSDARG00000012125 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000012125
Name	cnga1
Description	cyclic nucleotide gated channel alpha 1 [Source:ZFIN;Acc:ZDB-GENE-110408-39]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:ch211-149b19.5
Orthologs(s)	24 orthologs
Paralog(s)	7 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	5.22e3 5.22e3 6.36e3	82.51 82.51 78.69	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	7.60e3 7.60e3	74.56 74.56	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.35e4 1.35e4	54.80 54.80	AEIR AEIR
UBERON:0000922	embryo	[+] 1 stage ZFS:0000037Larval:Day 5	1.42e4 1.42e4	52.57 52.57	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.65e4 1.65e4 2.61e4	44.68 44.68 12.61	AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	2.34e4 2.34e4	21.75 21.75	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.55e4 2.55e4	14.70 14.70	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.61e4 2.61e4	12.74 12.74	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	17 genes ENSG00000198515 CNGA1 ENSMUSG00000067220 Cnga1 ENSPTRG00000016036 CNGA1 ENSGGOG00000013840 CNGA1 ENSMMUG00000005764 CNGA1 ENSRNOG00000004778 Cnga1 ENSBTAG00000002205 CNGA1 ENSECAG00000020953 CNGA1 ENSOCUG00000006384 CNGA1 ENSCAFG00000001917 CNGA1 ENSFCAG00000009134 CNGA1 ENSCPOG00000024444 CNGA1 ENSMODG00000020622 CNGA1 ENSOANG00000015247 CNGA1 ENSGALG00000014136 CNGA1 ENSACAG00000006622 CNGA1 ENSXETG00000009833 cnga1	Compare expression	[+]
Bilateria	24 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	24 genes ENSG00000198515 CNGA1 ENSMUSG00000067220 Cnga1 FBgn0261612 CngA WBGene00006526 tax-4 ENSPTRG00000016036 CNGA1 ENSGGOG00000013840 CNGA1 ENSMMUG00000005764 CNGA1 ENSRNOG00000004778 Cnga1 ENSBTAG00000002205 CNGA1 ENSECAG00000020953 CNGA1 ENSOCUG00000006384 CNGA1 ENSCAFG00000001917 CNGA1 ENSFCAG00000009134 CNGA1 ENSCPOG00000024444 CNGA1 ENSMODG00000020622 CNGA1 ENSOANG00000015247 CNGA1 ENSGALG00000014136 CNGA1 ENSACAG00000006622 CNGA1 ENSXETG00000009833 cnga1 FBgn0088319 GF11279 FBgn0143032 GI20296 FBgn0196841 GD25555 FBgn0209137 GJ22023 FBgn0231708 GE14082	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000012125.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	4 genes ENSDARG00000012297 cnga3b ENSDARG00000070726 cnga3a ENSDARG00000100436 CNGA2 (1 to many) ENSDARG00000102968 cnga5	Compare expression	[+]
Bilateria	5 genes ENSDARG00000012297 cnga3b ENSDARG00000029898 CNGA1 (1 to many) ENSDARG00000070726 cnga3a ENSDARG00000100436 CNGA2 (1 to many) ENSDARG00000102968 cnga5	Compare expression	[+]
Eukaryota	7 genes ENSDARG00000012297 cnga3b ENSDARG00000029898 CNGA1 (1 to many) ENSDARG00000069383 cnga4 ENSDARG00000070726 cnga3a ENSDARG00000077382 si:rp71-68n21.12 ENSDARG00000100436 CNGA2 (1 to many) ENSDARG00000102968 cnga5	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000012125.

Cross-references

Ensembl	ENSDARG00000012125 (cnga1)
ZFIN	ZDB-GENE-110408-39 (cnga1)
EMBL	CR318612
Uniprot/SPTREMBL	E7FE78, E7FE78_DANRE, X1WH66, X1WH66_DANRE