D. rerio Gene: zgc:109965 - ENSDARG00000012126 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012126
Namezgc:109965
Descriptionzgc:109965 [Source:ZFIN;Acc:ZDB-GENE-050913-21]
OrganismDanio rerio (zebrafish)
Orthologs(s)7 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.20e3
  • 1.20e3
  • 1.50e4
95.98
  • 95.98
  • 49.93
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.06e3
  • 4.06e3
  • 1.15e4
86.40
  • 86.40
  • 61.49
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.20e3
  • 6.20e3
79.23
  • 79.23
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
7.31e3
  • 7.31e3
  • 1.02e4
  • 1.86e4
  • 1.87e4
  • 1.97e4
75.54
  • 75.54
  • 65.91
  • 37.83
  • 37.49
  • 33.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.51e3
  • 9.51e3
  • 1.51e4
68.16
  • 68.16
  • 49.51
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.31e4
  • 2.31e4
22.66
  • 22.66
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000012126.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000012126.

Cross-references

EnsemblENSDARG00000012126 (zgc:109965)
ZFINZDB-GENE-050913-21 (zgc:109965)
EMBLCR792457
Uniprot/SPTREMBLF1QYJ7, F1QYJ7_DANRE

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