D. rerio Gene: scp2a - ENSDARG00000012194 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012194
Namescp2a
Descriptionsterol carrier protein 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1846]
OrganismDanio rerio (zebrafish)
Synonym(s)scp2, scp2 {eco:0000313|embl:aah63230.1,gn eco:0000313|zfin:zdb-gene-040426-1846}, zgc:77634
Orthologs(s)30 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
308
  • 308
  • 1.12e4
  • 1.12e4
  • 1.21e4
98.97
  • 98.97
  • 62.48
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
661
  • 661
97.79
  • 97.79
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.45e3
  • 1.45e3
  • 6.32e3
95.16
  • 95.16
  • 78.85
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.60e3
  • 1.60e3
94.64
  • 94.64
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.70e3
  • 1.70e3
94.31
  • 94.31
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.73e3
  • 1.73e3
  • 5.33e3
  • 6.38e3
  • 6.74e3
  • 8.24e3
94.20
  • 94.20
  • 82.15
  • 78.65
  • 77.44
  • 72.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.02e3
  • 2.02e3
93.24
  • 93.24
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.08e3
  • 3.08e3
89.70
  • 89.70
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.56e3
  • 3.56e3
  • 7.96e3
88.10
  • 88.10
  • 73.34
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.66e3
  • 3.66e3
87.74
  • 87.74
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.99
  • 86.99
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.93e3
  • 4.93e3
  • 5.60e3
83.49
  • 83.49
  • 81.24
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.91
  • 80.91
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.75e3
  • 5.75e3
80.76
  • 80.76
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
5.77e3
  • 5.77e3
  • 9.96e3
  • 1.06e4
  • 1.28e4
  • 1.36e4
  • 1.44e4
  • 1.49e4
80.67
  • 80.67
  • 66.65
  • 64.65
  • 57.18
  • 54.61
  • 51.88
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.13e3
  • 6.13e3
79.46
  • 79.46
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.17e3
  • 6.17e3
79.35
  • 79.35
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.29e3
  • 6.29e3
78.95
  • 78.95
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.01e3
  • 7.01e3
76.55
  • 76.55
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.25e3
  • 7.25e3
75.73
  • 75.73
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.11e3
  • 8.11e3
72.85
  • 72.85
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.77e3
  • 8.77e3
70.63
  • 70.63
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
9.88e3
  • 9.88e3
  • 1.25e4
66.91
  • 66.91
  • 58.08
AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
  • 1.10e4
  • 1.34e4
  • 1.34e4
64.27
  • 64.27
  • 63.32
  • 55.24
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.16e4
  • 1.16e4
61.04
  • 61.04
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.18e4
  • 1.18e4
  • 1.21e4
60.63
  • 60.63
  • 59.33
AEIR
  • AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000037Larval:Day 5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.32e4
  • 1.32e4
  • 1.34e4
  • 1.40e4
55.86
  • 55.86
  • 54.97
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species30 genesCompare expression

Orthology information comes from OMA : ENSDARG00000012194.

Cross-references

EnsemblENSDARG00000012194 (scp2a)
ZFINZDB-GENE-040426-1846 (scp2a)
EMBLAL954171, BC063230
Uniprot/SPTREMBLQ6P4V5, Q6P4V5_DANRE

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