D. rerio Gene: psme3 - ENSDARG00000012234 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012234
Namepsme3
Descriptionproteasome activator subunit 3 [Source:ZFIN;Acc:ZDB-GENE-991110-19]
OrganismDanio rerio (zebrafish)
Synonym(s)fb19c08, unp310, wu:fb19c08
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
182
  • 182
99.39
  • 99.39
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
214
  • 214
99.29
  • 99.29
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
262
  • 262
  • 264
  • 596
  • 1.49e3
  • 1.63e3
99.13
  • 99.13
  • 99.12
  • 98.01
  • 95.02
  • 94.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
272
  • 272
  • 842
  • 878
  • 1.15e3
  • 1.20e3
  • 1.24e3
  • 1.27e3
  • 1.53e3
  • 1.77e3
  • 2.01e3
  • 2.11e3
  • 2.83e3
  • 3.92e3
  • 6.16e3
  • 8.71e3
  • 1.41e4
  • 1.44e4
99.09
  • 99.09
  • 97.18
  • 97.06
  • 96.16
  • 95.98
  • 95.86
  • 95.76
  • 94.89
  • 94.09
  • 93.28
  • 92.93
  • 90.51
  • 86.86
  • 79.37
  • 70.85
  • 52.87
  • 51.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
301
  • 301
99.00
  • 99.00
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
501
  • 501
  • 731
  • 1.08e3
  • 1.19e3
  • 1.48e3
  • 2.52e3
98.33
  • 98.33
  • 97.55
  • 96.39
  • 96.02
  • 95.04
  • 91.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.03e3
  • 1.03e3
96.57
  • 96.57
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.07e3
  • 1.07e3
96.43
  • 96.43
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.10e3
  • 1.10e3
  • 1.96e3
  • 3.10e3
  • 7.32e3
96.31
  • 96.31
  • 93.43
  • 89.63
  • 75.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.28e3
  • 1.28e3
95.73
  • 95.73
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.31e3
  • 1.31e3
  • 1.38e3
  • 1.48e3
  • 1.62e3
  • 1.85e3
  • 2.01e3
  • 2.15e3
  • 2.39e3
  • 2.62e3
  • 4.18e3
95.61
  • 95.61
  • 95.39
  • 95.04
  • 94.59
  • 93.80
  • 93.27
  • 92.80
  • 92.01
  • 91.24
  • 86.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.33e3
  • 1.33e3
95.54
  • 95.54
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.40e3
  • 1.40e3
95.33
  • 95.33
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.59e3
  • 1.59e3
94.69
  • 94.69
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.66e3
  • 1.66e3
94.45
  • 94.45
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.84e3
  • 1.84e3
  • 3.52e3
93.85
  • 93.85
  • 88.21
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
93.06
  • 93.06
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
2.08e3
  • 2.08e3
  • 4.13e3
  • 1.21e4
93.05
  • 93.05
  • 86.16
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.35e3
  • 2.35e3
92.13
  • 92.13
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.48
  • 91.48
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.61e3
  • 2.61e3
  • 3.28e3
91.26
  • 91.26
  • 89.01
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
2.61e3
  • 2.61e3
  • 4.37e3
  • 4.62e3
91.25
  • 91.25
  • 85.37
  • 84.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.83e3
  • 2.83e3
  • 1.38e4
90.53
  • 90.53
  • 53.77
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
89.35
  • 89.35
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.44e3
  • 3.44e3
  • 4.14e3
88.47
  • 88.47
  • 86.13
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
88.31
  • 88.31
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.62e3
  • 3.62e3
87.87
  • 87.87
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.91e3
  • 3.91e3
86.92
  • 86.92
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.01e3
  • 4.01e3
86.58
  • 86.58
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.74
  • 85.74
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.38e3
  • 4.38e3
85.33
  • 85.33
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.91
  • 84.91
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
84.83
  • 84.83
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.15e3
  • 6.15e3
79.42
  • 79.42
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species18 genesCompare expression
Bilateria23 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000012234.

Cross-references

EnsemblENSDARG00000012234 (psme3)
ZFINZDB-GENE-991110-19 (psme3)
EMBLBC045495, BC067556, BX001014
Uniprot/SPTREMBLQ7ZU20, Q7ZU20_DANRE, U3JAR1, U3JAR1_DANRE

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