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D. rerio Gene: rgma - ENSDARG00000012248 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012248
Namergma
Descriptionrepulsive guidance molecule family member a [Source:ZFIN;Acc:ZDB-GENE-040527-1]
OrganismDanio rerio (zebrafish)
Synonym(s)dlm, hfe2, id:ibd2030, rgmc, wu:fb72h09, zgc:110534
Orthologs(s)18 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
619
  • 619
97.93
  • 97.93
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.08e3
  • 1.08e3
  • 1.53e3
  • 1.64e3
  • 2.51e3
  • 2.53e3
  • 2.63e3
  • 2.94e3
  • 3.04e3
  • 3.48e3
  • 4.43e3
96.38
  • 96.38
  • 94.87
  • 94.50
  • 91.61
  • 91.52
  • 91.18
  • 90.17
  • 89.84
  • 88.34
  • 85.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.09e3
  • 1.09e3
96.34
  • 96.34
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.18e3
  • 1.18e3
  • 1.54e3
  • 1.86e3
  • 2.77e3
  • 3.29e3
  • 5.21e3
96.06
  • 96.06
  • 94.86
  • 93.79
  • 90.72
  • 89.00
  • 82.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.19e3
  • 1.19e3
  • 1.20e3
  • 1.31e3
  • 1.40e3
  • 1.66e3
  • 1.79e3
  • 1.96e3
  • 1.98e3
  • 2.08e3
  • 2.21e3
  • 2.34e3
  • 2.52e3
  • 3.64e3
  • 1.45e4
  • 1.47e4
  • 1.50e4
96.01
  • 96.01
  • 96.00
  • 95.60
  • 95.33
  • 94.46
  • 94.01
  • 93.43
  • 93.39
  • 93.03
  • 92.61
  • 92.18
  • 91.56
  • 87.83
  • 51.42
  • 50.90
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.33e3
  • 1.33e3
95.54
  • 95.54
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.66e3
  • 1.66e3
  • 2.87e3
94.44
  • 94.44
  • 90.40
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.69e3
  • 1.69e3
  • 2.47e3
  • 3.06e3
94.34
  • 94.34
  • 91.74
  • 89.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.92e3
  • 1.92e3
  • 1.94e3
  • 1.49e4
93.57
  • 93.57
  • 93.52
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.53e3
  • 2.53e3
  • 6.18e3
91.52
  • 91.52
  • 79.33
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
85.28
  • 85.28
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
4.69e3
  • 4.69e3
  • 8.16e3
84.31
  • 84.31
  • 72.67
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.43e3
  • 5.43e3
81.82
  • 81.82
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.50e3
  • 5.50e3
81.59
  • 81.59
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.01e3
  • 6.01e3
79.88
  • 79.88
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.26e3
  • 6.26e3
  • 1.02e4
  • 1.26e4
  • 1.41e4
79.03
  • 79.03
  • 65.93
  • 57.65
  • 52.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
77.44
  • 77.44
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
8.79e3
  • 8.79e3
  • 9.96e3
  • 1.08e4
70.57
  • 70.57
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.16e4
  • 1.16e4
61.04
  • 61.04
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 1.38e4
59.38
  • 59.38
  • 53.68
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.74
  • 56.74
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.29e4
  • 1.29e4
  • 1.34e4
56.65
  • 56.65
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
  • 1.39e4
54.97
  • 54.97
  • 53.55
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000024Segmentation:5-9 somites
1.36e4
  • 1.36e4
54.52
  • 54.52
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.45
  • 54.45
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.94
  • 51.94
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.97
  • 49.97
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.56
  • 46.56
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.81e4
  • 1.81e4
39.33
  • 39.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.05
  • 31.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria18 species18 genesCompare expression

Orthology information comes from OMA : ENSDARG00000012248.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000012248.

Cross-references

EnsemblENSDARG00000012248 (rgma)
ZFINZDB-GENE-040527-1 (rgma)
EMBLBX649578
Uniprot/SPTREMBLQ1LVM8, Q1LVM8_DANRE

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