Gene: clcn1b - ENSDARG00000012269 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000012269
Name	clcn1b
Description	chloride channel, voltage-sensitive 1b [Source:ZFIN;Acc:ZDB-GENE-100921-11]
Organism	Danio rerio (zebrafish)
Synonym(s)	cr855317.3
Orthologs(s)	17 orthologs
Paralog(s)	4 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	4.51e3 4.51e3	84.89 84.89	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	8.43e3 8.43e3	71.78 71.78	AEIR AEIR
UBERON:0000922	embryo	[+] 3 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage	1.48e4 1.48e4 1.78e4 2.04e4	50.34 50.34 40.47 31.61	AEIR AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.65e4 1.65e4	44.61 44.61	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.74e4 1.74e4	41.88 41.88	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.80e4 1.80e4	39.86 39.86	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.97e4 1.97e4 2.22e4	33.91 33.91 25.77	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.05e4 2.05e4	31.47 31.47	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	2.07e4 2.07e4	30.79 30.79	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	17 genes ENSG00000188037 CLCN1 ENSMUSG00000029862 Clcn1 ENSPTRG00000019807 CLCN1 ENSGGOG00000011223 CLCN1 ENSMMUG00000012632 CLCN1 ENSRNOG00000016917 Clcn1 ENSBTAG00000009182 CLCN1 ENSSSCG00000016462 CLCN1 ENSECAG00000011529 CLCN1 ENSOCUG00000011147 CLCN1 ENSCAFG00000003619 CLCN1 ENSFCAG00000007278 CLCN1 ENSCPOG00000014700 CLCN1 ENSOANG00000003501 CLCN1 ENSGALG00000014695 CLCN1 ENSACAG00000006998 CLCN1 ENSXETG00000024892 clcn1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000012269.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Neopterygii	1 gene ENSDARG00000062084 clcn1a	Compare expression	[+]
Metazoa	4 genes ENSDARG00000060439 clcn2c ENSDARG00000062084 clcn1a ENSDARG00000062427 clcn2a ENSDARG00000104550 clcn2b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000012269.

Cross-references

Ensembl	ENSDARG00000012269 (clcn1b)
ZFIN	ZDB-GENE-100921-11 (clcn1b)
Uniprot/SPTREMBL	F1Q927, F1Q927_DANRE