D. rerio Gene: clcn1b - ENSDARG00000012269 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012269
Nameclcn1b
Descriptionchloride channel, voltage-sensitive 1b [Source:ZFIN;Acc:ZDB-GENE-100921-11]
OrganismDanio rerio (zebrafish)
Synonym(s)cr855317.3
Orthologs(s)17 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.89
  • 84.89
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.43e3
  • 8.43e3
71.78
  • 71.78
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
1.48e4
  • 1.48e4
  • 1.78e4
  • 2.04e4
50.34
  • 50.34
  • 40.47
  • 31.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.61
  • 44.61
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.88
  • 41.88
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.86
  • 39.86
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.97e4
  • 1.97e4
  • 2.22e4
33.91
  • 33.91
  • 25.77
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.47
  • 31.47
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.79
  • 30.79
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Metazoa4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000012269.

Cross-references

EnsemblENSDARG00000012269 (clcn1b)
ZFINZDB-GENE-100921-11 (clcn1b)
Uniprot/SPTREMBLF1Q927, F1Q927_DANRE

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