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D. rerio Gene: syt13 - ENSDARG00000012306 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012306
Namesyt13
Descriptionsynaptotagmin XIII [Source:ZFIN;Acc:ZDB-GENE-050417-135]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:112063
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.00e3
  • 2.00e3
  • 1.57e4
93.29
  • 93.29
  • 47.56
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
2.10e3
  • 2.10e3
  • 1.74e4
92.97
  • 92.97
  • 41.66
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.45e3
  • 2.45e3
  • 1.50e4
91.81
  • 91.81
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.01e3
  • 4.01e3
  • 4.09e3
86.57
  • 86.57
  • 86.32
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
85.87
  • 85.87
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.26e3
  • 5.26e3
82.39
  • 82.39
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
5.68e3
  • 5.68e3
  • 1.20e4
  • 1.30e4
  • 1.55e4
  • 1.69e4
  • 1.78e4
81.00
  • 81.00
  • 59.67
  • 56.44
  • 48.12
  • 43.36
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.82e3
  • 6.82e3
77.16
  • 77.16
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.88e3
  • 6.88e3
76.97
  • 76.97
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.32e3
  • 7.32e3
75.49
  • 75.49
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.59e3
  • 7.59e3
74.60
  • 74.60
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
8.14e3
  • 8.14e3
  • 8.17e3
  • 8.81e3
  • 9.19e3
  • 1.11e4
72.74
  • 72.74
  • 72.66
  • 70.49
  • 69.23
  • 62.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 1.12e4
69.99
  • 69.99
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.15e3
  • 9.15e3
69.38
  • 69.38
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
9.95e3
  • 9.95e3
  • 1.42e4
  • 1.54e4
66.68
  • 66.68
  • 52.33
  • 48.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001904habenula
  • ZFS:0000037Larval:Day 5
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.05e4
  • 1.05e4
  • 1.12e4
  • 1.16e4
  • 1.19e4
  • 1.22e4
64.99
  • 64.99
  • 62.49
  • 61.10
  • 59.99
  • 59.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.05e4
  • 1.05e4
  • 1.17e4
  • 1.20e4
64.99
  • 64.99
  • 60.84
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.05e4
  • 1.05e4
  • 1.74e4
64.84
  • 64.84
  • 41.64
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.06e4
  • 1.06e4
  • 1.26e4
  • 1.34e4
  • 1.39e4
64.49
  • 64.49
  • 57.68
  • 55.15
  • 53.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
1.07e4
  • 1.07e4
64.27
  • 64.27
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.96
  • 63.96
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.14e4
63.87
  • 63.87
  • 62.49
  • 61.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.09e4
  • 1.09e4
63.65
  • 63.65
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
62.49
  • 62.49
  • 60.70
  • 60.70
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.14e4
  • 1.14e4
  • 1.14e4
  • 1.17e4
  • 1.24e4
  • 1.26e4
  • 1.36e4
  • 1.36e4
  • 1.41e4
  • 1.43e4
  • 1.43e4
  • 1.44e4
  • 1.46e4
  • 1.47e4
  • 1.48e4
  • 1.50e4
  • 1.50e4
61.75
  • 61.75
  • 61.75
  • 60.67
  • 58.61
  • 57.86
  • 54.60
  • 54.57
  • 52.87
  • 52.25
  • 52.04
  • 51.66
  • 51.12
  • 50.74
  • 50.58
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.15e4
  • 1.15e4
  • 1.21e4
  • 1.21e4
  • 1.27e4
  • 1.27e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
61.53
  • 61.53
  • 59.36
  • 59.36
  • 57.47
  • 57.47
  • 57.13
  • 56.79
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.48
  • 61.48
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.15e4
  • 1.15e4
  • 1.17e4
  • 1.22e4
  • 1.27e4
  • 1.27e4
61.34
  • 61.34
  • 60.68
  • 59.06
  • 57.47
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.17e4
  • 1.17e4
60.94
  • 60.94
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.18e4
  • 1.18e4
  • 1.47e4
60.33
  • 60.33
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.61e4
  • 1.61e4
45.93
  • 45.93
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.15
  • 35.15
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
30.98
  • 30.98
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.58
  • 28.58
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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