D. rerio Gene: GEN1 - ENSDARG00000012325 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012325
NameGEN1
Descriptionzgc:110269 [Source:ZFIN;Acc:ZDB-GENE-050417-81]
OrganismDanio rerio (zebrafish)
Synonym(s)flj40869, gen, im:7147072, q568j1
Orthologs(s)1 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.68e3
  • 3.68e3
87.67
  • 87.67
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
4.54e3
  • 4.54e3
  • 5.31e3
  • 5.46e3
  • 5.49e3
  • 5.59e3
  • 6.33e3
84.79
  • 84.79
  • 82.22
  • 81.70
  • 81.62
  • 81.29
  • 78.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.67e3
  • 4.67e3
84.35
  • 84.35
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.70e3
  • 4.70e3
84.27
  • 84.27
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
4.86e3
  • 4.86e3
  • 4.94e3
  • 5.35e3
  • 6.28e3
  • 6.47e3
  • 6.51e3
  • 6.85e3
  • 7.35e3
  • 7.51e3
  • 8.96e3
83.73
  • 83.73
  • 83.45
  • 82.08
  • 78.96
  • 78.35
  • 78.22
  • 77.06
  • 75.39
  • 74.84
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
4.98e3
  • 4.98e3
  • 6.00e3
  • 6.06e3
  • 6.34e3
  • 6.50e3
  • 6.54e3
  • 6.64e3
  • 6.66e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.16e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.71e3
  • 8.96e3
  • 8.96e3
  • 8.97e3
  • 9.65e3
  • 9.98e3
  • 1.03e4
  • 1.06e4
  • 1.08e4
  • 1.19e4
  • 1.44e4
83.33
  • 83.33
  • 79.90
  • 79.72
  • 78.78
  • 78.24
  • 78.12
  • 77.77
  • 77.70
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 76.03
  • 74.99
  • 74.99
  • 73.52
  • 70.85
  • 69.99
  • 69.99
  • 69.96
  • 67.70
  • 66.60
  • 65.57
  • 64.61
  • 63.82
  • 60.18
  • 51.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
5.44e3
  • 5.44e3
  • 5.60e3
  • 6.00e3
  • 6.84e3
  • 7.92e3
81.79
  • 81.79
  • 81.25
  • 79.92
  • 77.11
  • 73.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.51e3
  • 5.51e3
81.56
  • 81.56
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.52e3
  • 5.52e3
  • 5.81e3
  • 9.28e3
81.52
  • 81.52
  • 80.55
  • 68.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.96e3
  • 5.96e3
  • 1.11e4
80.04
  • 80.04
  • 62.82
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.43e3
  • 6.43e3
  • 1.31e4
78.47
  • 78.47
  • 56.19
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.12e3
  • 7.12e3
76.17
  • 76.17
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.42e3
  • 7.42e3
  • 1.39e4
75.15
  • 75.15
  • 53.57
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.43e3
  • 7.43e3
75.14
  • 75.14
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
7.51e3
  • 7.51e3
  • 9.91e3
74.87
  • 74.87
  • 66.83
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.53e3
  • 7.53e3
  • 1.20e4
74.77
  • 74.77
  • 59.86
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.62e3
  • 7.62e3
74.48
  • 74.48
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.00e3
  • 8.00e3
73.23
  • 73.23
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.37e3
  • 8.37e3
71.98
  • 71.98
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.54e3
  • 8.54e3
71.40
  • 71.40
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.81e3
  • 8.81e3
70.49
  • 70.49
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.93e3
  • 8.93e3
70.09
  • 70.09
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.13e3
  • 9.13e3
69.43
  • 69.43
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
9.99e3
  • 9.99e3
  • 1.06e4
  • 1.13e4
66.57
  • 66.57
  • 64.37
  • 62.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.41
  • 65.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.35
  • 62.35
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.50
  • 61.50
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.61
  • 60.61
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.35
  • 57.35
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.32e4
  • 1.32e4
55.70
  • 55.70
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.03
  • 54.03
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.02
  • 41.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000012325.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000012325.

Cross-references

EnsemblENSDARG00000012325 (GEN1)
HGNCHGNC:26881 (GEN1)
ZFINZDB-GENE-050417-81 (zgc:110269)
EMBLBC092837, CR377211
Uniprot/SPTREMBLF1QYB4, F1QYB4_DANRE
Uniprot/SWISSPROTB0UXL7, FEN1B_DANRE

Do not show this banner again