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D. rerio Gene: trim46a - ENSDARG00000012367 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012367
Nametrim46a
Descriptiontripartite motif containing 46a [Source:ZFIN;Acc:ZDB-GENE-110825-1]
OrganismDanio rerio (zebrafish)
Synonym(s)trim46, zmp:0000000540
Orthologs(s)13 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.44e3
  • 6.44e3
78.42
  • 78.42
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.55e3
  • 7.55e3
74.73
  • 74.73
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.01e4
  • 1.01e4
  • 1.16e4
  • 1.64e4
  • 1.95e4
  • 2.05e4
66.07
  • 66.07
  • 61.08
  • 45.01
  • 34.56
  • 31.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.37e4
  • 1.37e4
  • 1.38e4
54.15
  • 54.15
  • 53.68
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.50e4
  • 1.50e4
  • 1.66e4
49.84
  • 49.84
  • 44.25
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
29.94
  • 29.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000012367.

Cross-references

EnsemblENSDARG00000012367 (trim46a)
ZFINZDB-GENE-110825-1 (trim46a)
EMBLCT030031
Uniprot/SPTREMBLE7F8R6, E7F8R6_DANRE

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