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D. rerio Gene: rdh10b - ENSDARG00000012369 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012369
Namerdh10b
Descriptionretinol dehydrogenase 10b [Source:ZFIN;Acc:ZDB-GENE-030909-7]
OrganismDanio rerio (zebrafish)
Synonym(s)b0v2u0, cb804, rdh10
Orthologs(s)1 orthologs
Paralog(s)37 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
259
  • 259
99.13
  • 99.13
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
588
  • 588
98.03
  • 98.03
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
643
  • 643
  • 2.14e3
97.85
  • 97.85
  • 92.85
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
654
  • 654
97.81
  • 97.81
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.37e3
  • 1.37e3
95.43
  • 95.43
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.38e3
  • 1.38e3
95.40
  • 95.40
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
95.21
  • 95.21
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.53e3
  • 1.53e3
94.89
  • 94.89
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.62e3
  • 1.62e3
94.57
  • 94.57
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.08e3
  • 2.08e3
93.03
  • 93.03
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
2.24e3
  • 2.24e3
  • 5.96e3
92.50
  • 92.50
  • 80.06
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.58e3
  • 3.58e3
88.03
  • 88.03
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.74e3
  • 3.74e3
87.49
  • 87.49
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
4.49e3
  • 4.49e3
  • 7.35e3
  • 8.94e3
  • 1.29e4
  • 1.49e4
84.97
  • 84.97
  • 75.39
  • 70.07
  • 56.71
  • 50.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.54
  • 82.54
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.22
  • 81.22
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.81e3
  • 5.81e3
  • 7.40e3
80.55
  • 80.55
  • 75.21
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.47e3
  • 6.47e3
78.33
  • 78.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.52e3
  • 6.52e3
78.17
  • 78.17
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.88e3
  • 6.88e3
76.98
  • 76.98
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.03e3
  • 7.03e3
76.46
  • 76.46
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.98e3
  • 8.98e3
  • 9.97e3
69.93
  • 69.93
  • 66.63
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.47e3
  • 9.47e3
68.28
  • 68.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.77
  • 67.77
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.98
  • 65.98
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.11e4
  • 1.11e4
  • 1.53e4
62.80
  • 62.80
  • 48.65
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000012369.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Deuterostomia3 genesCompare expression
Bilateria4 genesCompare expression
Eumetazoa5 genesCompare expression
Opisthokonta7 genesCompare expression
Eukaryota37 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000012369.

Cross-references

EnsemblENSDARG00000012369 (rdh10b)
ZFINZDB-GENE-030909-7 (rdh10b)
EMBLBC054596, CT027743
Uniprot/SWISSPROTQ7T2D1, RD10B_DANRE

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