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D. rerio Gene: mmp13a - ENSDARG00000012395 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012395
Namemmp13a
Descriptionmatrix metallopeptidase 13a [Source:ZFIN;Acc:ZDB-GENE-031202-2]
OrganismDanio rerio (zebrafish)
Synonym(s)cb1034, mmp13, mmplg, mmplh

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
253
  • 253
99.16
  • 99.16
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
535
  • 535
98.21
  • 98.21
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
723
  • 723
97.58
  • 97.58
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • UBERON:0000109gastrula stage
  • UBERON:0000104life cycle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
830
  • 830
  • 1.46e4
  • 1.49e4
  • 1.50e4
  • 1.55e4
  • 1.55e4
  • 1.59e4
  • 1.61e4
  • 1.67e4
  • 1.71e4
  • 1.71e4
97.23
  • 97.23
  • 51.12
  • 49.99
  • 49.92
  • 48.25
  • 47.95
  • 46.64
  • 45.93
  • 44.04
  • 42.84
  • 42.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.63e3
  • 1.63e3
  • 1.03e4
94.55
  • 94.55
  • 65.43
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.46e3
  • 2.46e3
91.76
  • 91.76
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.68e3
  • 3.68e3
87.67
  • 87.67
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.53e3
  • 6.53e3
78.13
  • 78.13
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
6.58e3
  • 6.58e3
  • 9.92e3
  • 1.26e4
  • 1.31e4
  • 1.44e4
  • 1.51e4
  • 1.59e4
  • 1.76e4
  • 1.76e4
77.96
  • 77.96
  • 66.79
  • 57.71
  • 56.08
  • 51.76
  • 49.34
  • 46.93
  • 41.20
  • 40.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.32e3
  • 7.32e3
  • 1.19e4
75.50
  • 75.50
  • 60.21
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.72e3
  • 8.72e3
70.79
  • 70.79
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
8.92e3
  • 8.92e3
70.15
  • 70.15
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.43
  • 67.43
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
9.95e3
  • 9.95e3
  • 1.24e4
  • 1.41e4
66.70
  • 66.70
  • 58.42
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004535cardiovascular system
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
CL:0000235macrophage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.19e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
66.66
  • 66.66
  • 62.50
  • 60.00
  • 50.00
  • 50.00
  • 49.99
  • 49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.03
  • 64.03
AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.28
  • 58.28
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000030Pharyngula:Prim-15
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.31e4
  • 1.31e4
  • 1.36e4
56.19
  • 56.19
  • 54.38
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.42e4
  • 1.42e4
52.59
  • 52.59
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.39
  • 50.39
AEIR
  • AEIR
CL:0000576monocyte
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000106extension
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.56
  • 49.56
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
  • 1.80e4
48.89
  • 48.89
  • 39.84
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.00
  • 43.00
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.89
  • 40.89
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.66
  • 40.66
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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