D. rerio Gene: col1a1a - ENSDARG00000012405 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012405
Namecol1a1a
Descriptioncollagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
OrganismDanio rerio (zebrafish)
Synonym(s)alpha1(i), cb21, chi, chihuahua, col1a1, med, microwaved, sb:cb21, sb:cb384, wu:fa99c12, wu:fb02c06
Orthologs(s)17 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.02
  • 5.02
  • 341
99.99
  • 99.99
  • 98.86
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000104life cycle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
123
  • 123
  • 159
  • 214
  • 347
  • 435
  • 570
  • 774
  • 2.84e3
  • 6.64e3
  • 6.65e3
  • 1.25e4
  • 1.28e4
  • 1.38e4
  • 1.43e4
  • 1.44e4
99.59
  • 99.59
  • 99.47
  • 99.29
  • 98.84
  • 98.55
  • 98.10
  • 97.41
  • 90.48
  • 77.77
  • 77.73
  • 58.10
  • 57.25
  • 53.85
  • 52.04
  • 51.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
136
  • 136
  • 208
  • 259
99.55
  • 99.55
  • 99.31
  • 99.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
172
  • 172
  • 200
  • 322
  • 330
  • 412
  • 489
  • 657
  • 3.99e3
  • 1.34e4
  • 1.67e4
99.43
  • 99.43
  • 99.33
  • 98.92
  • 98.90
  • 98.62
  • 98.36
  • 97.80
  • 86.65
  • 55.16
  • 44.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
182
  • 182
99.39
  • 99.39
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
218
  • 218
99.27
  • 99.27
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
264
  • 264
99.12
  • 99.12
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
286
  • 286
99.05
  • 99.05
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
288
  • 288
  • 1.77e3
99.04
  • 99.04
  • 94.08
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
337
  • 337
  • 2.18e3
  • 9.20e3
98.87
  • 98.87
  • 92.71
  • 69.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
505
  • 505
98.31
  • 98.31
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
770
  • 770
97.42
  • 97.42
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
810
  • 810
97.29
  • 97.29
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.10e3
  • 1.10e3
  • 1.23e4
96.32
  • 96.32
  • 58.94
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.84e3
  • 1.84e3
93.83
  • 93.83
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.98e3
  • 2.98e3
90.02
  • 90.02
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
89.82
  • 89.82
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.31e3
  • 3.31e3
88.92
  • 88.92
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.52e3
  • 4.52e3
84.88
  • 84.88
AEIR
  • AEIR
UBERON:0016631actinopterygian frontal-parietal joint
  • ZFS:0000043Juvenile:Days 45-89
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:2005317pectoral fin fold
  • ZFS:0000035Larval:Protruding-mouth
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
6.15e3
  • 6.15e3
  • 7.12e3
  • 7.91e3
  • 8.22e3
  • 8.22e3
  • 1.14e4
  • 1.21e4
  • 1.28e4
  • 1.49e4
79.40
  • 79.40
  • 76.18
  • 73.52
  • 72.48
  • 72.48
  • 61.75
  • 59.36
  • 57.14
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
6.28e3
  • 6.28e3
  • 1.22e4
  • 1.27e4
78.99
  • 78.99
  • 59.01
  • 57.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.44e3
  • 6.44e3
78.42
  • 78.42
AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
7.03e3
  • 7.03e3
  • 7.97e3
  • 7.97e3
  • 9.96e3
76.46
  • 76.46
  • 73.32
  • 73.32
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000062osteoblast
  • ZFS:0000036Larval:Day 4
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000042Juvenile:Days 30-44
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000134mesenchymal cell
  • ZFS:0000042Juvenile:Days 30-44
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2001922inter-frontal joint
  • ZFS:0000042Juvenile:Days 30-44
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.34e4
75.00
  • 75.00
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
8.68e3
  • 8.68e3
  • 1.19e4
70.95
  • 70.95
  • 60.31
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.72e3
  • 8.72e3
70.81
  • 70.81
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.59
  • 70.59
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
8.96e3
  • 8.96e3
  • 1.08e4
  • 1.23e4
  • 1.25e4
  • 1.27e4
  • 1.28e4
  • 1.49e4
69.99
  • 69.99
  • 63.87
  • 58.80
  • 58.31
  • 57.47
  • 57.12
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.21e4
  • 1.28e4
66.67
  • 66.67
  • 59.36
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000040median fin fold
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.31e4
  • 1.38e4
  • 1.49e4
66.66
  • 66.66
  • 62.50
  • 56.24
  • 53.83
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
  • 1.12e4
  • 1.15e4
  • 1.32e4
64.99
  • 64.99
  • 62.50
  • 61.53
  • 55.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000038Larval:Day 6
  • ZFS:0000042Juvenile:Days 30-44
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.37
  • 62.37
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.15e4
  • 1.15e4
  • 1.75e4
61.46
  • 61.46
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.18e4
60.50
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0003066pharyngeal arch 2
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000037Larval:Day 5
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
57.87
  • 57.87
  • 57.87
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.76
  • 52.76
AEIR
  • AEIR
UBERON:0000043tendon
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000211ligament
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000042Juvenile:Days 30-44
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002025stratum basale of epidermis
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002067dermis
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002360meninx
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003933cranial cartilage
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001089myoseptum
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.55e4
  • 1.55e4
  • 1.71e4
47.99
  • 47.99
  • 42.77
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.57e4
  • 1.57e4
47.26
  • 47.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression
Chordata4 genesCompare expression
Bilateria6 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000012405.

Cross-references

EnsemblENSDARG00000012405 (col1a1a)
ZFINZDB-GENE-030131-9102 (col1a1a)
EMBLAL929222
Uniprot/SPTREMBLF1QJC9, F1QJC9_DANRE, F1QSC5, F1QSC5_DANRE

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