D. rerio Gene: col1a1a - ENSDARG00000012405 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012405
Namecol1a1a
Descriptioncollagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
OrganismDanio rerio (zebrafish)
Synonym(s)alpha1(i), cb21, chi, chihuahua, col1a1, med, microwaved, sb:cb21, sb:cb384, wu:fa99c12, wu:fb02c06

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.99
  • 4.99
  • 339
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
110
  • 110
  • 135
  • 190
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000104life cycle
  • ZFS:0000024Segmentation:5-9 somites
122
  • 122
  • 158
  • 213
  • 344
  • 431
  • 565
  • 768
  • 2.82e3
  • 6.58e3
  • 6.59e3
  • 1.24e4
  • 1.27e4
  • 1.37e4
  • 1.42e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
147
  • 147
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
172
  • 172
  • 200
  • 322
  • 328
  • 383
  • 489
  • 653
  • 3.96e3
  • 1.33e4
  • 1.66e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
264
  • 264
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
286
  • 286
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
288
  • 288
  • 1.77e3
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
770
  • 770
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
810
  • 810
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.09e3
  • 1.09e3
  • 8.96e3
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.41e3
  • 1.41e3
  • 9.11e3
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.83e3
  • 1.83e3
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.96e3
  • 2.96e3
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.31e3
  • 3.31e3
AEIR
  • AEIR
UBERON:0016631actinopterygian frontal-parietal joint
  • ZFS:0000043Juvenile:Days 45-89
4.93e3
  • 4.93e3
AEIR
  • AEIR
UBERON:2005317pectoral fin fold
  • ZFS:0000035Larval:Protruding-mouth
4.93e3
  • 4.93e3
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
6.09e3
  • 6.09e3
  • 7.05e3
  • 7.84e3
  • 8.14e3
  • 8.14e3
  • 1.13e4
  • 1.20e4
  • 1.27e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
6.23e3
  • 6.23e3
  • 1.22e4
  • 1.26e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.44e3
  • 6.44e3
AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
6.97e3
  • 6.97e3
  • 7.89e3
  • 7.89e3
  • 9.87e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000062osteoblast
  • ZFS:0000036Larval:Day 4
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000042Juvenile:Days 30-44
7.40e3
  • 7.40e3
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000134mesenchymal cell
  • ZFS:0000042Juvenile:Days 30-44
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:2001922inter-frontal joint
  • ZFS:0000042Juvenile:Days 30-44
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.40e3
  • 7.40e3
  • 1.33e4
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.95e3
  • 7.95e3
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
8.61e3
  • 8.61e3
  • 1.17e4
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.66e3
  • 8.66e3
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
8.88e3
  • 8.88e3
  • 1.07e4
  • 1.22e4
  • 1.23e4
  • 1.26e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.08e3
  • 9.08e3
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.22e3
  • 9.22e3
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
9.86e3
  • 9.86e3
  • 1.20e4
  • 1.27e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000040median fin fold
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
9.87e3
  • 9.87e3
  • 1.11e4
  • 1.29e4
  • 1.37e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
1.04e4
  • 1.04e4
  • 1.11e4
  • 1.14e4
  • 1.30e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000038Larval:Day 6
  • ZFS:0000042Juvenile:Days 30-44
1.11e4
  • 1.11e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
  • 1.17e4
AEIR
  • AEIR
  • AEIR
UBERON:0003066pharyngeal arch 2
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000037Larval:Day 5
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.25e4
  • 1.25e4
  • 1.25e4
  • 1.27e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
1.33e4
  • 1.33e4
AEIR
  • AEIR
UBERON:0000043tendon
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000211ligament
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000042Juvenile:Days 30-44
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0002025stratum basale of epidermis
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0002067dermis
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0002360meninx
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0003933cranial cartilage
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001089myoseptum
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL929222
EnsemblENSDARG00000012405 (col1a1a)
Uniprot/SPTREMBLF1QJC9, F1QJC9_DANRE, F1QSC5, F1QSC5_DANRE
ZFINZDB-GENE-030131-9102 (col1a1a)

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