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D. rerio Gene: mgat1a - ENSDARG00000012407 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012407
Namemgat1a
Descriptionmannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase a [Source:ZFIN;Acc:ZDB-GENE-040426-1515]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:66030
Orthologs(s)6 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.50
  • 95.50
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
2.25e3
  • 2.25e3
  • 3.27e3
  • 3.42e3
  • 7.93e3
  • 8.35e3
92.46
  • 92.46
  • 89.05
  • 88.54
  • 73.46
  • 72.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.89e3
  • 2.89e3
90.34
  • 90.34
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
89.81
  • 89.81
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.92e3
  • 3.92e3
86.89
  • 86.89
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.07e3
  • 4.07e3
86.36
  • 86.36
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.37e3
  • 4.37e3
85.39
  • 85.39
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.74e3
  • 4.74e3
84.14
  • 84.14
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.89e3
  • 4.89e3
83.64
  • 83.64
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.95e3
  • 4.95e3
83.44
  • 83.44
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.74
  • 82.74
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.16e3
  • 5.16e3
82.72
  • 82.72
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.39e3
  • 5.39e3
  • 7.49e3
81.97
  • 81.97
  • 74.93
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.73e3
  • 5.73e3
80.83
  • 80.83
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.22
  • 80.22
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.01e3
  • 6.01e3
79.87
  • 79.87
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.06e3
  • 6.06e3
79.70
  • 79.70
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
6.39e3
  • 6.39e3
  • 6.94e3
  • 7.22e3
  • 8.01e3
  • 8.15e3
  • 8.46e3
78.62
  • 78.62
  • 76.76
  • 75.82
  • 73.17
  • 72.72
  • 71.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
6.55e3
  • 6.55e3
  • 7.65e3
  • 8.72e3
  • 8.87e3
  • 9.00e3
  • 9.62e3
  • 9.67e3
  • 9.73e3
  • 9.81e3
  • 1.04e4
  • 1.11e4
  • 1.12e4
  • 1.15e4
  • 1.17e4
78.07
  • 78.07
  • 74.38
  • 70.79
  • 70.31
  • 69.87
  • 67.80
  • 67.61
  • 67.42
  • 67.15
  • 65.29
  • 62.95
  • 62.55
  • 61.48
  • 60.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.82e3
  • 6.82e3
77.18
  • 77.18
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.35e3
  • 7.35e3
  • 8.81e3
  • 9.87e3
  • 9.97e3
  • 1.00e4
  • 1.04e4
  • 1.05e4
  • 1.08e4
  • 1.17e4
  • 1.18e4
75.39
  • 75.39
  • 70.49
  • 66.94
  • 66.61
  • 66.42
  • 65.10
  • 64.81
  • 63.81
  • 60.70
  • 60.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.05e3
  • 8.05e3
73.04
  • 73.04
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.09e3
  • 8.09e3
  • 9.13e3
72.92
  • 72.92
  • 69.44
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.16e3
  • 8.16e3
72.68
  • 72.68
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.06e3
  • 9.06e3
  • 9.10e3
  • 1.08e4
69.67
  • 69.67
  • 69.54
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.12e3
  • 9.12e3
69.46
  • 69.46
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.27e3
  • 9.27e3
  • 9.71e3
  • 1.00e4
68.98
  • 68.98
  • 67.50
  • 66.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.76e3
  • 9.76e3
  • 1.35e4
67.32
  • 67.32
  • 54.66
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.92e3
  • 9.92e3
66.77
  • 66.77
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.08
  • 64.08
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.06
  • 61.06
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.23e4
  • 1.23e4
  • 1.27e4
58.91
  • 58.91
  • 57.63
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria6 species6 genesCompare expression

Orthology information comes from OMA : ENSDARG00000012407.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000012407.

Cross-references

EnsemblENSDARG00000012407 (mgat1a)
ZFINZDB-GENE-040426-1515 (mgat1a)
EMBLBX629344
Uniprot/SPTREMBLF1QTA6, F1QTA6_DANRE

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