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D. rerio Gene: col11a2 - ENSDARG00000012422 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012422
Namecol11a2
Descriptioncollagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
OrganismDanio rerio (zebrafish)
Synonym(s)col11a1
Orthologs(s)16 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
977
  • 977
  • 1.73e3
  • 2.57e3
96.73
  • 96.73
  • 94.19
  • 91.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
1.23e3
  • 1.23e3
  • 1.83e3
  • 2.27e3
  • 2.94e3
  • 3.63e3
  • 4.58e3
  • 1.10e4
  • 1.78e4
95.88
  • 95.88
  • 93.88
  • 92.39
  • 90.15
  • 87.86
  • 84.66
  • 63.27
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.24e3
  • 1.24e3
  • 9.18e3
95.84
  • 95.84
  • 69.27
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
2.26e3
  • 2.26e3
  • 3.32e3
  • 3.44e3
  • 5.21e3
  • 5.69e3
  • 7.43e3
  • 7.92e3
  • 1.44e4
  • 1.45e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
92.43
  • 92.43
  • 88.89
  • 88.47
  • 82.56
  • 80.94
  • 75.13
  • 73.49
  • 51.83
  • 51.42
  • 50.90
  • 50.25
  • 49.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.05e3
  • 6.05e3
79.73
  • 79.73
AEIR
  • AEIR
UBERON:0009635parachordal cartilage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 8.96e3
  • 9.19e3
  • 1.24e4
  • 1.32e4
  • 1.32e4
  • 1.34e4
75.00
  • 75.00
  • 69.99
  • 69.22
  • 58.32
  • 55.97
  • 55.86
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011242ethmoid cartilage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.19e4
75.00
  • 75.00
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000038Larval:Day 6
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
8.96e3
  • 8.96e3
  • 9.96e3
70.00
  • 70.00
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
8.96e3
  • 8.96e3
  • 1.28e4
69.98
  • 69.98
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.39e3
  • 9.39e3
  • 1.16e4
68.54
  • 68.54
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
62.54
  • 62.54
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
  • 1.41e4
54.13
  • 54.13
  • 52.63
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.11
  • 53.11
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.60
  • 50.60
AEIR
  • AEIR
UBERON:0004124myocardium trabecular layer
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0004742dentary
  • ZFS:0000038Larval:Day 6
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007215trabecula cranii
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0011615basihyal cartilage
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0011607hyomandibular cartilage
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.21
  • 49.21
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.56e4
  • 1.56e4
47.71
  • 47.71
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.43
  • 46.43
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.74e4
  • 1.74e4
41.58
  • 41.58
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.75e4
  • 1.75e4
  • 1.76e4
41.42
  • 41.42
  • 41.19
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.25
  • 40.25
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
  • 2.06e4
37.59
  • 37.59
  • 31.10
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Deuterostomia5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000012422.

Cross-references

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