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D. rerio Gene: rlbp1a - ENSDARG00000012504 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012504
Namerlbp1a
Descriptionretinaldehyde binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1662]
OrganismDanio rerio (zebrafish)
Synonym(s)cralbpa, cralbpb, rlbp1b, rlbp1l, zgc:73076
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
401
  • 401
  • 1.48e3
  • 4.73e3
  • 7.96e3
  • 1.17e4
  • 1.20e4
98.66
  • 98.66
  • 95.04
  • 84.15
  • 73.35
  • 60.84
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
3.15e3
  • 3.15e3
  • 4.59e3
  • 7.64e3
  • 8.18e3
  • 1.24e4
  • 1.48e4
  • 1.48e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
  • 1.50e4
  • 1.51e4
89.46
  • 89.46
  • 84.62
  • 74.43
  • 72.62
  • 58.49
  • 50.35
  • 50.32
  • 50.20
  • 49.92
  • 49.91
  • 49.81
  • 49.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
3.21e3
  • 3.21e3
  • 5.10e3
  • 1.25e4
  • 1.30e4
  • 1.47e4
  • 1.48e4
  • 1.50e4
89.25
  • 89.25
  • 82.94
  • 58.13
  • 56.46
  • 50.65
  • 50.51
  • 49.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
3.21e3
  • 3.21e3
  • 4.39e3
  • 7.66e3
89.25
  • 89.25
  • 85.31
  • 74.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.55e3
  • 4.55e3
84.77
  • 84.77
AEIR
  • AEIR
CL:0000636Mueller cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 9.44e3
  • 9.96e3
  • 1.20e4
  • 1.20e4
  • 1.21e4
  • 1.21e4
  • 1.25e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 68.40
  • 66.65
  • 59.98
  • 59.98
  • 59.36
  • 59.36
  • 58.31
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000037Larval:Day 5
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
  • 1.99e4
66.04
  • 66.04
  • 33.22
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
1.07e4
  • 1.07e4
  • 1.42e4
  • 1.49e4
64.28
  • 64.28
  • 52.54
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0015241parapineal organ
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002192ventricular system choroidal fissure
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.24e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.49e4
62.49
  • 62.49
  • 62.49
  • 58.33
  • 57.14
  • 57.14
  • 57.14
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.23e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
  • 1.24e4
58.80
  • 58.80
  • 58.80
  • 58.80
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000020Gastrula:75%-epiboly
1.25e4
  • 1.25e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000012504.

Cross-references

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