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D. rerio Gene: u2af2a - ENSDARG00000012505 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012505
Nameu2af2a
DescriptionU2 small nuclear RNA auxiliary factor 2a [Source:ZFIN;Acc:ZDB-GENE-050706-131]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:110115
Orthologs(s)20 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
603
  • 603
  • 783
97.99
  • 97.99
  • 97.38
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
623
  • 623
  • 901
97.92
  • 97.92
  • 96.99
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.20e3
  • 1.20e3
95.98
  • 95.98
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.66e3
  • 1.66e3
94.46
  • 94.46
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.68e3
  • 1.68e3
  • 1.75e3
  • 2.12e3
  • 2.44e3
  • 3.47e3
94.36
  • 94.36
  • 94.13
  • 92.92
  • 91.85
  • 88.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.72e3
  • 1.72e3
  • 2.79e3
94.24
  • 94.24
  • 90.65
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.19e3
  • 2.19e3
  • 5.38e3
92.68
  • 92.68
  • 81.98
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.85
  • 88.85
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.20
  • 87.20
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
3.86e3
  • 3.86e3
87.07
  • 87.07
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
  • 5.16e3
85.69
  • 85.69
  • 82.72
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.42e3
  • 4.42e3
85.19
  • 85.19
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
84.16
  • 84.16
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
4.77e3
  • 4.77e3
84.02
  • 84.02
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.86e3
  • 4.86e3
83.75
  • 83.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.88e3
  • 4.88e3
83.68
  • 83.68
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.77
  • 82.77
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
82.26
  • 82.26
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.33e3
  • 5.33e3
82.15
  • 82.15
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.36e3
  • 5.36e3
82.07
  • 82.07
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.55e3
  • 5.55e3
81.42
  • 81.42
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.72e3
  • 5.72e3
80.84
  • 80.84
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.84e3
  • 5.84e3
80.45
  • 80.45
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.85e3
  • 5.85e3
80.41
  • 80.41
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.19
  • 80.19
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.04e3
  • 6.04e3
79.79
  • 79.79
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi12 species13 genesCompare expression
Bilateria19 species20 genesCompare expression

Orthology information comes from OMA : ENSDARG00000012505.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000012505.

Cross-references

EnsemblENSDARG00000012505 (u2af2a)
ZFINZDB-GENE-050706-131 (u2af2a)
EMBLCR848818
Uniprot/SPTREMBLE7F8Y4, E7F8Y4_DANRE, F1QVD2, F1QVD2_DANRE

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