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D. rerio Gene: hcfc1b - ENSDARG00000012519 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012519
Namehcfc1b
Descriptionhost cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
OrganismDanio rerio (zebrafish)
Synonym(s)fc07b09, fe17f08, wu:fc07b09, wu:fe17f08
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
  • UBERON:0000104life cycle
702
  • 702
  • 893
  • 988
  • 1.03e3
  • 1.14e3
  • 1.17e3
  • 1.34e3
  • 1.46e3
  • 1.63e3
  • 1.92e3
  • 2.36e3
  • 2.59e3
  • 2.73e3
  • 3.12e3
  • 1.38e4
  • 1.46e4
  • 1.49e4
  • 1.50e4
97.65
  • 97.65
  • 97.01
  • 96.69
  • 96.54
  • 96.20
  • 96.09
  • 95.51
  • 95.11
  • 94.53
  • 93.58
  • 92.10
  • 91.33
  • 90.86
  • 89.55
  • 53.74
  • 51.01
  • 49.99
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.17e3
  • 1.17e3
96.07
  • 96.07
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.25e3
  • 1.25e3
  • 1.39e3
  • 1.53e3
  • 1.89e3
  • 2.18e3
  • 2.44e3
95.82
  • 95.82
  • 95.34
  • 94.88
  • 93.69
  • 92.70
  • 91.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.31e3
  • 1.31e3
95.60
  • 95.60
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
1.42e3
  • 1.42e3
  • 2.26e3
  • 2.43e3
  • 2.67e3
  • 2.80e3
  • 3.09e3
  • 3.62e3
  • 4.63e3
  • 5.76e3
  • 6.35e3
95.26
  • 95.26
  • 92.43
  • 91.86
  • 91.07
  • 90.64
  • 89.65
  • 87.89
  • 84.50
  • 80.72
  • 78.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.54e3
  • 1.54e3
94.85
  • 94.85
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.81e3
  • 1.81e3
  • 1.88e3
  • 2.79e3
  • 3.98e3
  • 5.25e3
93.94
  • 93.94
  • 93.70
  • 90.65
  • 86.66
  • 82.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.12e3
  • 2.12e3
92.91
  • 92.91
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.15e3
  • 2.15e3
92.79
  • 92.79
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
  • 3.73e3
  • 5.12e3
  • 7.89e3
92.76
  • 92.76
  • 87.50
  • 82.84
  • 73.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
2.91e3
  • 2.91e3
  • 6.23e3
  • 1.21e4
90.25
  • 90.25
  • 79.15
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.18e3
  • 3.18e3
89.35
  • 89.35
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.20e3
  • 3.20e3
89.29
  • 89.29
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.45e3
  • 3.45e3
  • 3.62e3
  • 6.26e3
88.46
  • 88.46
  • 87.87
  • 79.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
84.99
  • 84.99
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.66e3
  • 4.66e3
84.41
  • 84.41
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.86e3
  • 4.86e3
  • 5.54e3
83.75
  • 83.75
  • 81.46
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.98e3
  • 4.98e3
  • 6.40e3
83.32
  • 83.32
  • 78.59
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.50e3
  • 5.50e3
81.59
  • 81.59
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.63e3
  • 5.63e3
81.16
  • 81.16
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.88
  • 80.88
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.88
  • 80.88
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.22
  • 80.22
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.19e3
  • 6.19e3
79.28
  • 79.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.09
  • 79.09
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.01e3
  • 7.01e3
76.55
  • 76.55
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.04e3
  • 7.04e3
76.43
  • 76.43
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.18e3
  • 7.18e3
75.97
  • 75.97
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.95e3
  • 7.95e3
73.40
  • 73.40
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.25e3
  • 8.25e3
72.39
  • 72.39
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.84e3
  • 9.84e3
67.04
  • 67.04
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.75
  • 65.75
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.75
  • 62.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000012519.

Cross-references

EnsemblENSDARG00000012519 (hcfc1b)
ZFINZDB-GENE-030131-2411 (hcfc1b)
EMBLBX571687
Uniprot/SPTREMBLA8WIP5, A8WIP5_DANRE

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