D. rerio Gene: pdcd10b - ENSDARG00000012591 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012591
Namepdcd10b
Descriptionprogrammed cell death 10b [Source:ZFIN;Acc:ZDB-GENE-040426-2607]
OrganismDanio rerio (zebrafish)
Synonym(s)ccm3b, pdcd10-like, zgc:85629

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.01e3
  • 2.01e3
93.20298
  • 93.20298
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.05e3
  • 2.05e3
93.06292
  • 93.06292
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
2.12e3
  • 2.12e3
  • 2.12e3
  • 2.35e3
  • 3.42e3
  • 3.45e3
92.82865
  • 92.82865
  • 92.82626
  • 92.04472
  • 88.45034
  • 88.35891
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.53376
  • 92.53376
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
2.39e3
  • 2.39e3
  • 3.13e3
  • 1.11e4
  • 1.11e4
91.91085
  • 91.91085
  • 89.42423
  • 62.49830
  • 62.49830
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
2.40e3
  • 2.40e3
  • 2.56e3
  • 2.72e3
  • 3.19e3
  • 4.19e3
  • 4.39e3
  • 4.63e3
  • 4.90e3
  • 4.93e3
  • 5.41e3
  • 6.14e3
  • 6.22e3
  • 6.42e3
  • 6.58e3
  • 6.70e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.91e3
  • 6.97e3
  • 7.40e3
  • 7.40e3
  • 7.53e3
  • 7.84e3
  • 8.52e3
  • 8.88e3
  • 8.88e3
  • 1.38e4
  • 1.47e4
91.88657
  • 91.88657
  • 91.36711
  • 90.82560
  • 89.22384
  • 85.84555
  • 85.15218
  • 84.36993
  • 83.43099
  • 83.32826
  • 81.72829
  • 79.25740
  • 78.98576
  • 78.30768
  • 77.76763
  • 77.35536
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 76.65821
  • 76.46123
  • 74.99322
  • 74.99322
  • 74.54498
  • 73.51758
  • 71.20871
  • 69.98817
  • 69.98817
  • 53.43805
  • 50.24552
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.41e3
  • 2.41e3
91.87385
  • 91.87385
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.55358
  • 91.55358
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.41838
  • 91.41838
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.61e3
  • 2.61e3
91.17243
  • 91.17243
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
2.71e3
  • 2.71e3
  • 3.68e3
  • 4.72e3
90.85965
  • 90.85965
  • 87.55226
  • 84.06155
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.96e3
  • 2.96e3
90.00402
  • 90.00402
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
3.01e3
  • 3.01e3
  • 3.24e3
  • 3.72e3
  • 3.89e3
  • 4.31e3
  • 4.40e3
  • 4.62e3
  • 4.97e3
  • 5.52e3
  • 7.13e3
89.84125
  • 89.84125
  • 89.06596
  • 87.43165
  • 86.86612
  • 85.44269
  • 85.12146
  • 84.37710
  • 83.21437
  • 81.35285
  • 75.88907
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.70814
  • 89.70814
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.31e3
  • 3.31e3
88.82936
  • 88.82936
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
88.05357
  • 88.05357
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
3.70e3
  • 3.70e3
  • 1.20e4
87.48859
  • 87.48859
  • 59.59010
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.75e3
  • 3.75e3
87.33544
  • 87.33544
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.09e3
  • 4.09e3
86.19282
  • 86.19282
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
85.75702
  • 85.75702
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.30e3
  • 4.30e3
  • 4.47e3
  • 1.44e4
85.47298
  • 85.47298
  • 84.89183
  • 51.33311
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.74e3
  • 4.74e3
83.97570
  • 83.97570
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.81e3
  • 4.81e3
  • 6.62e3
83.74758
  • 83.74758
  • 77.63147
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.27e3
  • 5.27e3
82.19176
  • 82.19176
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.50e3
  • 5.50e3
81.40073
  • 81.40073
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
5.73e3
  • 5.73e3
  • 1.29e4
80.63493
  • 80.63493
  • 56.24156
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.74e3
  • 5.74e3
  • 5.75e3
  • 6.33e3
80.61423
  • 80.61423
  • 80.55478
  • 78.60885
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.34e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.58e3
  • 6.83e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.89e3
  • 8.46e3
  • 8.46e3
  • 8.63e3
  • 8.71e3
  • 8.71e3
  • 8.88e3
  • 8.88e3
  • 9.05e3
  • 9.05e3
  • 9.05e3
  • 9.62e3
  • 9.87e3
  • 9.87e3
78.56975
  • 78.56975
  • 78.56975
  • 78.56975
  • 77.77439
  • 76.91633
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 73.32320
  • 71.42518
  • 71.41166
  • 70.82487
  • 70.57472
  • 70.57472
  • 69.98817
  • 69.98310
  • 69.42923
  • 69.42923
  • 69.42923
  • 67.48142
  • 66.65990
  • 66.65314
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
6.42e3
  • 6.42e3
  • 6.72e3
  • 6.85e3
78.31136
  • 78.31136
  • 77.27737
  • 76.84082
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.49e3
  • 6.49e3
78.07405
  • 78.07405
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.29e4
  • 1.29e4
56.48254
  • 56.48254
AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000033Hatching:Long-pec
1.32e4
  • 1.32e4
55.54540
  • 55.54540
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCT027583
EnsemblENSDARG00000012591 (pdcd10b)
Uniprot/SPTREMBLB8JJS6, B8JJS6_DANRE
ZFINZDB-GENE-040426-2607 (pdcd10b)

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