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D. rerio Gene: eif3ja - ENSDARG00000012603 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012603
Nameeif3ja
Descriptioneukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
OrganismDanio rerio (zebrafish)
Synonym(s)eif3j, eif3s1, fb48g07, wu:fb48g07, zgc:63801
Orthologs(s)23 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
623
  • 623
97.92
  • 97.92
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
674
  • 674
  • 1.10e3
  • 2.31e3
  • 2.34e3
  • 2.99e3
97.75
  • 97.75
  • 96.34
  • 92.26
  • 92.16
  • 89.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
697
  • 697
97.67
  • 97.67
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
929
  • 929
96.89
  • 96.89
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.03e3
  • 1.03e3
  • 1.14e3
  • 1.14e3
  • 1.28e3
  • 1.52e3
  • 1.58e3
  • 1.77e3
  • 1.93e3
  • 2.24e3
  • 2.28e3
  • 2.37e3
  • 2.81e3
  • 3.47e3
  • 4.38e3
  • 7.91e3
  • 8.79e3
  • 1.28e4
  • 1.37e4
  • 1.47e4
96.56
  • 96.56
  • 96.19
  • 96.19
  • 95.72
  • 94.92
  • 94.70
  • 94.08
  • 93.53
  • 92.51
  • 92.37
  • 92.05
  • 90.60
  • 88.40
  • 85.35
  • 73.52
  • 70.57
  • 57.08
  • 54.18
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.06e3
  • 1.06e3
  • 1.07e3
  • 1.17e3
  • 1.18e3
  • 1.25e3
  • 1.31e3
  • 1.88e3
  • 2.05e3
  • 2.13e3
  • 2.14e3
96.46
  • 96.46
  • 96.44
  • 96.08
  • 96.04
  • 95.83
  • 95.61
  • 93.71
  • 93.13
  • 92.87
  • 92.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.11e3
  • 1.11e3
  • 1.52e3
  • 1.97e3
  • 2.39e3
96.27
  • 96.27
  • 94.92
  • 93.42
  • 92.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.14e3
  • 1.14e3
96.17
  • 96.17
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
1.15e3
  • 1.15e3
  • 1.76e3
  • 1.80e3
  • 1.97e3
  • 2.81e3
  • 3.28e3
96.14
  • 96.14
  • 94.09
  • 93.96
  • 93.40
  • 90.60
  • 89.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.26e3
  • 1.26e3
  • 1.34e4
  • 1.34e4
  • 1.37e4
  • 1.44e4
95.77
  • 95.77
  • 54.97
  • 54.97
  • 54.13
  • 51.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.29e3
  • 1.29e3
95.67
  • 95.67
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
95.47
  • 95.47
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.36e3
  • 1.36e3
95.44
  • 95.44
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.41e3
  • 1.41e3
95.27
  • 95.27
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.49e3
  • 1.49e3
  • 2.87e3
  • 1.45e4
95.03
  • 95.03
  • 90.39
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.56e3
  • 1.56e3
  • 1.42e4
  • 1.43e4
94.77
  • 94.77
  • 52.35
  • 52.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.78e3
  • 1.78e3
  • 2.19e3
94.05
  • 94.05
  • 92.67
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.79e3
  • 1.79e3
94.02
  • 94.02
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.96e3
  • 1.96e3
93.43
  • 93.43
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
93.38
  • 93.38
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.02e3
  • 2.02e3
93.24
  • 93.24
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
2.02e3
  • 2.02e3
  • 2.24e3
  • 1.21e4
93.22
  • 93.22
  • 92.50
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.14e3
  • 2.14e3
92.83
  • 92.83
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.15e3
  • 2.15e3
92.79
  • 92.79
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.17e3
  • 2.17e3
92.73
  • 92.73
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.29e3
  • 2.29e3
92.32
  • 92.32
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
91.67
  • 91.67
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.44
  • 90.44
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.88e3
  • 2.88e3
  • 3.32e3
90.35
  • 90.35
  • 88.87
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
2.89e3
  • 2.89e3
  • 3.45e3
  • 3.75e3
90.32
  • 90.32
  • 88.44
  • 87.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.74
  • 89.74
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.31e3
  • 3.31e3
88.92
  • 88.92
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.84
  • 88.84
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
  • 1.32e4
  • 1.36e4
  • 1.37e4
  • 1.39e4
  • 1.50e4
56.65
  • 56.65
  • 55.82
  • 54.53
  • 54.15
  • 53.55
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.31e4
  • 1.31e4
  • 1.38e4
  • 1.39e4
  • 1.39e4
56.23
  • 56.23
  • 53.83
  • 53.55
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.39e4
  • 1.39e4
  • 1.39e4
53.55
  • 53.55
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0011150pharyngeal arch derived gill
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species17 genesCompare expression
Bilateria22 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000012603.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000012603.

Cross-references

EnsemblENSDARG00000012603 (eif3ja)
ZFINZDB-GENE-040426-1266 (eif3ja)
EMBLCU694372
Uniprot/SPTREMBLF1RA22, F1RA22_DANRE, F8W3K1, F8W3K1_DANRE

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