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D. rerio Gene: tfap2b - ENSDARG00000012667 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012667
Nametfap2b
Descriptiontranscription factor AP-2 beta [Source:ZFIN;Acc:ZDB-GENE-050417-394]
OrganismDanio rerio (zebrafish)
Synonym(s)ap2b, si:dkey-5e16.1, zgc:110163
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
821
  • 821
  • 2.99e3
  • 4.88e3
  • 9.00e3
  • 1.20e4
97.25
  • 97.25
  • 90.00
  • 83.66
  • 69.88
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.42e3
  • 1.42e3
  • 3.71e3
  • 4.26e3
  • 8.78e3
  • 1.01e4
  • 1.02e4
  • 1.12e4
  • 1.39e4
  • 1.43e4
  • 1.52e4
95.26
  • 95.26
  • 87.57
  • 85.75
  • 70.61
  • 66.35
  • 66.00
  • 62.64
  • 53.31
  • 52.10
  • 49.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.67e3
  • 1.67e3
  • 1.28e4
94.43
  • 94.43
  • 57.30
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
1.92e3
  • 1.92e3
  • 2.69e3
  • 3.99e3
  • 6.05e3
  • 7.35e3
  • 8.68e3
  • 1.08e4
  • 1.33e4
  • 1.33e4
  • 1.36e4
  • 1.49e4
93.58
  • 93.58
  • 90.98
  • 86.65
  • 79.75
  • 75.39
  • 70.93
  • 63.83
  • 55.55
  • 55.36
  • 54.37
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.62e3
  • 2.62e3
91.24
  • 91.24
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.07e3
  • 3.07e3
  • 4.88e3
  • 5.04e3
89.73
  • 89.73
  • 83.67
  • 83.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000104life cycle
4.71e3
  • 4.71e3
  • 6.27e3
  • 1.22e4
  • 1.45e4
84.24
  • 84.24
  • 79.01
  • 59.08
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.30e3
  • 8.30e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
72.22
  • 72.22
  • 50.00
  • 50.00
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
8.54e3
  • 8.54e3
71.42
  • 71.42
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
8.54e3
  • 8.54e3
  • 8.54e3
  • 9.13e3
  • 1.15e4
  • 1.21e4
  • 1.21e4
  • 1.23e4
71.42
  • 71.42
  • 71.42
  • 69.43
  • 61.53
  • 59.36
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 9.07e3
  • 9.25e3
  • 9.71e3
  • 1.05e4
  • 1.17e4
  • 1.20e4
  • 1.26e4
69.98
  • 69.98
  • 69.62
  • 69.03
  • 67.48
  • 64.98
  • 60.84
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
9.13e3
  • 9.13e3
  • 9.67e3
  • 9.67e3
  • 1.05e4
  • 1.21e4
69.43
  • 69.43
  • 67.63
  • 67.63
  • 64.69
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
9.61e3
  • 9.61e3
  • 9.71e3
  • 9.71e3
  • 9.96e3
  • 1.15e4
  • 1.18e4
  • 1.22e4
  • 1.23e4
67.83
  • 67.83
  • 67.48
  • 67.48
  • 66.66
  • 61.34
  • 60.50
  • 59.06
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.67e3
  • 9.67e3
  • 9.67e3
  • 9.67e3
67.63
  • 67.63
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005499rhombomere 1
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000026Segmentation:14-19 somites
1.03e4
  • 1.03e4
65.37
  • 65.37
AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
64.69
  • 64.69
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.07e4
  • 1.07e4
  • 1.22e4
64.27
  • 64.27
  • 59.08
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.07e4
  • 1.07e4
64.12
  • 64.12
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.18e4
  • 1.23e4
  • 1.41e4
62.49
  • 62.49
  • 60.50
  • 58.80
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.73
  • 58.73
AEIR
  • AEIR
UBERON:0005511rhombomere 4
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
ZFA:0000821primary neuron hindbrain (Danio)
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
1.24e4
  • 1.24e4
  • 1.49e4
  • 1.49e4
58.33
  • 58.33
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
52.99
  • 52.99
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000026Segmentation:14-19 somites
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.87
  • 50.87
AEIR
  • AEIR
UBERON:0001708jaw skeleton
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005884hyoid arch skeleton
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005569rhombomere 2
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.97
  • 49.97
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.72
  • 46.72
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.65
  • 45.65
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.70e4
  • 1.70e4
43.10
  • 43.10
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.74e4
  • 1.74e4
41.76
  • 41.76
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.78e4
  • 1.78e4
40.43
  • 40.43
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.39
  • 39.39
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.07
  • 35.07
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.32
  • 32.32
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000012667.

Cross-references

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