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D. rerio Gene: hcls1 - ENSDARG00000012729 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012729
Namehcls1
Descriptionhematopoietic cell-specific Lyn substrate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7191]
OrganismDanio rerio (zebrafish)
Synonym(s)fk96b08, si:dkey-9a20.6, wu:fk96b08, zgc:154014
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
781
  • 781
97.39
  • 97.39
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.08e3
  • 1.08e3
96.38
  • 96.38
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.22e3
  • 1.22e3
95.93
  • 95.93
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.51
  • 95.51
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.10e3
  • 3.10e3
89.64
  • 89.64
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
3.33e3
  • 3.33e3
  • 6.68e3
  • 7.97e3
  • 9.62e3
  • 1.37e4
88.87
  • 88.87
  • 77.64
  • 73.32
  • 67.78
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.50e3
  • 3.50e3
88.28
  • 88.28
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.26
  • 87.26
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.35e3
  • 5.35e3
82.08
  • 82.08
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.50e3
  • 5.50e3
  • 1.59e4
81.58
  • 81.58
  • 46.84
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
5.97e3
  • 5.97e3
  • 1.12e4
80.02
  • 80.02
  • 62.57
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.48e3
  • 7.48e3
74.95
  • 74.95
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.73e3
  • 7.73e3
  • 1.43e4
74.13
  • 74.13
  • 51.98
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.89e3
  • 7.89e3
73.59
  • 73.59
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.89e3
  • 9.89e3
66.88
  • 66.88
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.11
  • 65.11
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.13
  • 62.13
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.13e4
  • 1.13e4
62.06
  • 62.06
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.47
  • 60.47
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.20e4
  • 1.20e4
  • 1.24e4
59.93
  • 59.93
  • 58.51
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.34
  • 59.34
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.33e4
  • 1.33e4
55.40
  • 55.40
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.41e4
  • 1.41e4
52.83
  • 52.83
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000012729.

Cross-references

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