D. rerio Gene: foxa3 - ENSDARG00000012788 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012788
Namefoxa3
Descriptionforkhead box A3 [Source:ZFIN;Acc:ZDB-GENE-980526-423]
OrganismDanio rerio (zebrafish)
Synonym(s)fa11c04, fc37a08, fkd2, forkhead-2, wu:fa11c04, wu:fc37a08, zf-fkh1, zffkh1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0002107liver
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000034Hatching:Pec-fin
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000038Larval:Day 6
  • ZFS:0000036Larval:Day 4
705
  • 705
  • 2.96e3
  • 3.70e3
  • 4.10e3
  • 7.40e3
  • 8.63e3
  • 9.86e3
  • 1.29e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000038Larval:Day 6
  • ZFS:0000034Hatching:Pec-fin
925
  • 925
  • 1.14e3
  • 5.55e3
  • 5.92e3
  • 8.46e3
  • 9.51e3
  • 1.06e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000038Larval:Day 6
1.23e3
  • 1.23e3
  • 7.40e3
  • 1.27e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
2.11e3
  • 2.11e3
  • 4.93e3
  • 6.34e3
  • 1.11e4
  • 1.29e4
  • 1.32e4
  • 1.36e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
2.30e3
  • 2.30e3
  • 2.74e3
  • 3.15e3
  • 3.93e3
  • 4.33e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
2.91e3
  • 2.91e3
  • 3.80e3
  • 4.84e3
  • 5.77e3
  • 6.91e3
  • 8.03e3
  • 8.88e3
  • 1.06e4
  • 1.28e4
  • 1.29e4
  • 1.37e4
  • 1.37e4
  • 1.39e4
  • 1.40e4
  • 1.53e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
2.96e3
  • 2.96e3
  • 5.95e3
  • 7.40e3
  • 9.86e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
3.47e3
  • 3.47e3
AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
4.93e3
  • 4.93e3
  • 6.17e3
  • 1.35e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
5.99e3
  • 5.99e3
  • 8.40e3
  • 8.71e3
  • 8.76e3
  • 9.18e3
  • 1.03e4
  • 1.12e4
  • 1.25e4
  • 1.59e4
  • 1.67e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003894liver primordium
  • ZFS:0000029Pharyngula:Prim-5
6.17e3
  • 6.17e3
AEIR
  • AEIR
UBERON:0003921pancreas primordium
  • ZFS:0000029Pharyngula:Prim-5
9.11e3
  • 9.11e3
AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000021Gastrula:90%-epiboly
9.25e3
  • 9.25e3
AEIR
  • AEIR
UBERON:0000089hypoblast (generic)
  • ZFS:0000019Gastrula:Shield
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0006859swim bladder bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.86e3
  • 9.86e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0003062primitive knot
  • ZFS:0000019Gastrula:Shield
1.08e4
  • 1.08e4
AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.11e4
  • 1.11e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0000061anatomical structure
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.11e4
  • 1.11e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003923dorsal pancreatic bud
  • ZFS:0000031Pharyngula:Prim-25
1.11e4
  • 1.11e4
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.14e4
  • 1.14e4
  • 1.39e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.18e4
  • 1.18e4
  • 1.29e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003063prechordal plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000025Segmentation:10-13 somites
1.18e4
  • 1.18e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
1.21e4
  • 1.21e4
  • 1.33e4
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.26e4
  • 1.26e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
1.27e4
  • 1.27e4
  • 1.29e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.30e4
  • 1.30e4
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000025Segmentation:10-13 somites
1.32e4
  • 1.32e4
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
1.32e4
  • 1.32e4
AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000016Blastula:30%-epiboly
1.32e4
  • 1.32e4
  • 1.37e4
AEIR
  • AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000033Hatching:Long-pec
1.35e4
  • 1.35e4
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000026Segmentation:14-19 somites
1.38e4
  • 1.38e4
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
AEIR
  • AEIR
CL:0000115endothelial cell
  • ZFS:0000034Hatching:Pec-fin
1.48e4
  • 1.48e4
AEIR
  • AEIR
CL:0000223endodermal cell
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0002394bile duct
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0007329pancreatic duct
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
ZFA:0005336presumptive swim bladder (Danio)
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004750blastoderm
  • ZFS:0000016Blastula:30%-epiboly
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0006860swim bladder
  • ZFS:0000034Hatching:Pec-fin
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0006595presumptive endoderm
  • ZFS:0000019Gastrula:Shield
1.48e4
  • 1.48e4
AEIR
  • AEIR
ZFA:0005738intestinal bulb primordium (Danio)
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
ZFA:0000541marginal blastomere (Danio)
  • ZFS:0000014Blastula:Sphere
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.64e4
  • 1.64e4
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.65e4
  • 1.65e4
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC162391, BX908751
EnsemblENSDARG00000012788 (foxa3)
Uniprot/SPTREMBLQ1LV18, Q1LV18_DANRE
ZFINZDB-GENE-980526-423 (foxa3)

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