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D. rerio Gene: slc4a1a - ENSDARG00000012881 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012881
Nameslc4a1a
Descriptionsolute carrier family 4 (anion exchanger), member 1a (Diego blood group) [Source:ZFIN;Acc:ZDB-GENE-010525-1]
OrganismDanio rerio (zebrafish)
Synonym(s)ae1, ae1/band 3, band3, erythroid anion exchanger 1, ret, retsina, si:dz180g5.1, slc4a1, slc4a1gn, zae1a, zgc:111889, zgc:152771
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
359
  • 359
98.80
  • 98.80
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
761
  • 761
97.46
  • 97.46
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
904
  • 904
96.98
  • 96.98
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.00e3
  • 1.00e3
  • 1.18e3
96.65
  • 96.65
  • 96.05
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.07e3
  • 1.07e3
  • 1.07e3
  • 1.24e3
  • 1.87e3
  • 2.49e3
  • 8.53e3
  • 9.33e3
96.43
  • 96.43
  • 96.43
  • 95.84
  • 93.75
  • 91.67
  • 71.43
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
1.43e3
  • 1.43e3
  • 1.65e3
  • 2.08e3
  • 3.40e3
  • 8.45e3
  • 9.42e3
  • 1.19e4
  • 1.47e4
  • 1.48e4
  • 1.49e4
  • 1.56e4
  • 1.78e4
  • 1.78e4
95.20
  • 95.20
  • 94.49
  • 93.04
  • 88.60
  • 71.70
  • 68.47
  • 59.99
  • 50.90
  • 50.61
  • 50.25
  • 47.76
  • 40.52
  • 40.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.52e3
  • 1.52e3
  • 1.53e3
  • 1.78e3
  • 1.85e3
  • 3.53e3
  • 4.24e3
  • 4.50e3
  • 1.78e4
94.92
  • 94.92
  • 94.88
  • 94.05
  • 93.80
  • 88.18
  • 85.82
  • 84.95
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.57e3
  • 1.57e3
94.74
  • 94.74
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.74e3
  • 1.74e3
94.18
  • 94.18
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.70
  • 90.70
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.75
  • 82.75
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
6.41e3
  • 6.41e3
  • 6.64e3
  • 1.05e4
78.54
  • 78.54
  • 77.77
  • 64.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.64e3
  • 6.64e3
77.79
  • 77.79
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.76e3
  • 6.76e3
  • 1.85e4
77.35
  • 77.35
  • 38.13
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
76.89
  • 76.89
AEIR
  • AEIR
CL:0000562nucleate erythrocyte
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.57e3
  • 7.57e3
  • 1.40e4
74.67
  • 74.67
  • 53.12
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.78e3
  • 7.78e3
73.96
  • 73.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.17e3
  • 8.17e3
72.63
  • 72.63
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
69.99
  • 69.99
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
9.24e3
  • 9.24e3
  • 1.14e4
69.06
  • 69.06
  • 61.74
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
67.16
  • 67.16
AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.02e4
  • 1.02e4
  • 1.49e4
65.77
  • 65.77
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
64.69
  • 64.69
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.66
  • 64.66
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.36
  • 63.36
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.57
  • 62.57
AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
  • 1.19e4
62.50
  • 62.50
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
1.14e4
  • 1.14e4
61.88
  • 61.88
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.16e4
  • 1.16e4
61.06
  • 61.06
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
  • 1.23e4
60.98
  • 60.98
  • 58.79
AEIR
  • AEIR
  • AEIR
UBERON:0003061blood island
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.16
  • 52.16
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.46e4
  • 1.46e4
51.13
  • 51.13
AEIR
  • AEIR
CL:0000762nucleated thrombocyte
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0005040posterior lateral mesoderm (Danio)
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000764erythroid lineage cell
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
45.97
  • 45.97
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.87
  • 45.87
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.64e4
  • 1.64e4
  • 1.75e4
45.16
  • 45.16
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.73e4
  • 1.73e4
42.04
  • 42.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000012881.

Cross-references

EnsemblENSDARG00000012881 (slc4a1a)
ZFINZDB-GENE-010525-1 (slc4a1a)
EMBLAF350072, BX088544
Uniprot/SPTREMBLF1RAE7, F1RAE7_DANRE, Q7ZZJ7, Q7ZZJ7_DANRE

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