D. rerio Gene: itgb5 - ENSDARG00000012942 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012942
Nameitgb5
Descriptionintegrin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6022]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fi30h12
Orthologs(s)22 orthologs
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.59e3
  • 1.59e3
94.69
  • 94.69
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
1.99e3
  • 1.99e3
  • 1.99e3
  • 2.01e3
  • 3.15e3
  • 4.20e3
93.35
  • 93.35
  • 93.33
  • 93.28
  • 89.47
  • 85.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
2.38e3
  • 2.38e3
  • 2.65e3
  • 3.44e3
  • 3.67e3
  • 4.86e3
  • 5.89e3
92.04
  • 92.04
  • 91.13
  • 88.47
  • 87.72
  • 83.74
  • 80.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
3.06e3
  • 3.06e3
  • 3.49e3
  • 3.89e3
  • 4.95e3
  • 5.07e3
  • 6.83e3
  • 7.39e3
  • 7.53e3
  • 7.72e3
  • 8.76e3
  • 9.00e3
  • 9.22e3
  • 1.02e4
  • 1.06e4
  • 1.41e4
  • 1.42e4
  • 1.50e4
89.75
  • 89.75
  • 88.32
  • 86.98
  • 83.44
  • 83.01
  • 77.13
  • 75.25
  • 74.78
  • 74.16
  • 70.67
  • 69.88
  • 69.14
  • 65.82
  • 64.66
  • 52.86
  • 52.43
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.43e3
  • 3.43e3
  • 9.13e3
  • 9.69e3
  • 1.00e4
88.51
  • 88.51
  • 69.42
  • 67.54
  • 66.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.45e3
  • 3.45e3
  • 9.07e3
88.46
  • 88.46
  • 69.64
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.16
  • 83.16
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.17e3
  • 5.17e3
82.69
  • 82.69
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.26e3
  • 5.26e3
82.40
  • 82.40
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.50e3
  • 5.50e3
  • 1.47e4
81.59
  • 81.59
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
81.25
  • 81.25
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.93e3
  • 5.93e3
80.13
  • 80.13
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.61e3
  • 6.61e3
  • 8.47e3
77.86
  • 77.86
  • 71.65
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
6.67e3
  • 6.67e3
  • 6.90e3
  • 8.58e3
  • 8.85e3
  • 9.13e3
  • 9.18e3
  • 9.51e3
  • 9.60e3
  • 9.62e3
  • 1.02e4
77.66
  • 77.66
  • 76.88
  • 71.26
  • 70.35
  • 69.41
  • 69.26
  • 68.14
  • 67.85
  • 67.80
  • 66.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.99e3
  • 6.99e3
76.59
  • 76.59
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.10e3
  • 7.10e3
76.23
  • 76.23
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.56e3
  • 7.56e3
74.70
  • 74.70
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.61e3
  • 7.61e3
74.53
  • 74.53
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.73e3
  • 7.73e3
  • 8.17e3
74.11
  • 74.11
  • 72.65
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.80e3
  • 7.80e3
  • 9.83e3
73.89
  • 73.89
  • 67.08
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.88e3
  • 7.88e3
73.63
  • 73.63
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.95e3
  • 7.95e3
  • 8.09e3
  • 8.24e3
73.40
  • 73.40
  • 72.91
  • 72.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.04e3
  • 8.04e3
73.09
  • 73.09
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.07e3
  • 8.07e3
72.96
  • 72.96
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.08e3
  • 8.08e3
72.95
  • 72.95
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.23e3
  • 8.23e3
72.45
  • 72.45
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.87
  • 71.87
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.49e3
  • 8.49e3
71.59
  • 71.59
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.69e3
  • 8.69e3
70.90
  • 70.90
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.31e3
  • 9.31e3
68.82
  • 68.82
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.46e3
  • 9.46e3
68.33
  • 68.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.97e3
  • 9.97e3
66.60
  • 66.60
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.80
  • 65.80
AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
1.26e4
  • 1.26e4
57.87
  • 57.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000012942.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000012942 (itgb5)
ZFINZDB-GENE-030131-6022 (itgb5)
EMBLCR391905, CR391951
Uniprot/SPTREMBLB0UY54, B0UY54_DANRE, B0UY74, B0UY74_DANRE, F1Q7R1, F1Q7R1_DANRE, F1QF91, F1QF91_DANRE

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