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D. rerio Gene: ska2 - ENSDARG00000012947 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000012947
Nameska2
Descriptionspindle and kinetochore associated complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-041008-202]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7140390
Orthologs(s)1 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
512
  • 512
  • 1.78e3
  • 2.05e3
  • 2.77e3
  • 6.30e3
98.29
  • 98.29
  • 94.03
  • 93.15
  • 90.74
  • 78.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
551
  • 551
98.16
  • 98.16
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.23e3
  • 1.23e3
95.89
  • 95.89
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.18
  • 95.18
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.64e3
  • 1.64e3
94.50
  • 94.50
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.96e3
  • 1.96e3
93.45
  • 93.45
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
92.77
  • 92.77
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.23e3
  • 2.23e3
  • 3.93e3
92.55
  • 92.55
  • 86.85
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.37e3
  • 2.37e3
92.07
  • 92.07
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.53e3
  • 2.53e3
  • 2.75e3
91.52
  • 91.52
  • 90.81
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.62e3
  • 2.62e3
91.23
  • 91.23
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.63e3
  • 2.63e3
91.21
  • 91.21
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.69e3
  • 2.69e3
90.99
  • 90.99
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.69e3
  • 2.69e3
90.99
  • 90.99
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
2.81e3
  • 2.81e3
  • 2.97e3
  • 3.56e3
  • 3.77e3
  • 3.79e3
  • 3.91e3
  • 5.49e3
  • 5.69e3
  • 6.02e3
  • 6.27e3
90.60
  • 90.60
  • 90.05
  • 88.09
  • 87.38
  • 87.32
  • 86.90
  • 81.61
  • 80.96
  • 79.85
  • 79.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.84e3
  • 2.84e3
  • 5.65e3
90.51
  • 90.51
  • 81.09
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.44
  • 90.44
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
3.03e3
  • 3.03e3
  • 4.61e3
  • 4.90e3
  • 5.45e3
  • 5.46e3
  • 5.53e3
  • 5.65e3
  • 5.67e3
  • 5.97e3
  • 6.09e3
  • 6.45e3
  • 7.20e3
  • 7.32e3
  • 7.61e3
89.86
  • 89.86
  • 84.57
  • 83.59
  • 81.76
  • 81.72
  • 81.48
  • 81.07
  • 81.01
  • 80.02
  • 79.61
  • 78.41
  • 75.90
  • 75.51
  • 74.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.76
  • 89.76
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
3.51e3
  • 3.51e3
  • 4.46e3
  • 5.55e3
  • 5.68e3
88.26
  • 88.26
  • 85.07
  • 81.41
  • 80.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.66e3
  • 3.66e3
87.75
  • 87.75
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.23
  • 87.23
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
  • 4.52e3
87.23
  • 87.23
  • 84.87
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.20
  • 87.20
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.01e3
  • 4.01e3
86.57
  • 86.57
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.05e3
  • 4.05e3
86.44
  • 86.44
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
4.33e3
  • 4.33e3
  • 4.79e3
  • 6.78e3
  • 8.01e3
  • 8.38e3
  • 1.02e4
85.52
  • 85.52
  • 83.96
  • 77.31
  • 73.19
  • 71.93
  • 65.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.50e3
  • 4.50e3
  • 6.11e3
  • 7.04e3
84.92
  • 84.92
  • 79.56
  • 76.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.63e3
  • 4.63e3
84.49
  • 84.49
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.89e3
  • 4.89e3
83.64
  • 83.64
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.51e3
  • 5.51e3
81.57
  • 81.57
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.30e3
  • 6.30e3
78.92
  • 78.92
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.95e3
  • 8.95e3
70.02
  • 70.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000012947.

Cross-references

EnsemblENSDARG00000012947 (ska2)
ZFINZDB-GENE-041008-202 (ska2)
EMBLBX088525
Uniprot/SPTREMBLF1R2V5, F1R2V5_DANRE

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