D. rerio Gene: hoxb5a - ENSDARG00000013057 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013057
Namehoxb5a
Descriptionhomeobox B5a [Source:ZFIN;Acc:ZDB-GENE-980526-70]
OrganismDanio rerio (zebrafish)
Synonym(s)hox-2.1, hox-b5, hoxb5, q4pra3, q6lbu7, q8awy7, wu:fc38c09, z-18, zf-21, zf21
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.30e3
  • 2.30e3
  • 1.50e4
  • 1.79e4
92.31
  • 92.31
  • 49.73
  • 40.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.24e3
  • 4.24e3
  • 4.49e3
  • 5.67e3
85.80
  • 85.80
  • 84.98
  • 81.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
84.59
  • 84.59
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
4.75e3
  • 4.75e3
  • 6.13e3
  • 7.02e3
  • 7.72e3
  • 7.82e3
  • 8.21e3
  • 9.44e3
  • 9.62e3
  • 9.90e3
  • 1.18e4
84.11
  • 84.11
  • 79.48
  • 76.50
  • 74.14
  • 73.83
  • 72.50
  • 68.40
  • 67.79
  • 66.85
  • 60.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000025Segmentation:10-13 somites
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
4.98e3
  • 4.98e3
  • 9.71e3
  • 1.04e4
  • 1.12e4
83.34
  • 83.34
  • 67.48
  • 65.19
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
5.61e3
  • 5.61e3
  • 6.36e3
  • 6.43e3
  • 8.97e3
  • 9.83e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
  • 1.10e4
  • 1.10e4
  • 1.27e4
  • 1.30e4
  • 1.31e4
  • 1.50e4
  • 1.50e4
81.21
  • 81.21
  • 78.72
  • 78.48
  • 69.97
  • 67.08
  • 66.65
  • 65.61
  • 64.01
  • 63.19
  • 63.09
  • 57.57
  • 56.48
  • 56.19
  • 49.81
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.77e3
  • 6.77e3
77.32
  • 77.32
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.83e3
  • 6.83e3
77.14
  • 77.14
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.86e3
  • 6.86e3
77.03
  • 77.03
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000104life cycle
7.41e3
  • 7.41e3
  • 1.09e4
  • 1.22e4
  • 1.36e4
  • 1.49e4
75.21
  • 75.21
  • 63.59
  • 59.08
  • 54.53
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.44e3
  • 7.44e3
75.09
  • 75.09
AEIR
  • AEIR
UBERON:2000728somite 2
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2000732somite 3
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.96e3
  • 1.08e4
70.57
  • 70.57
  • 69.99
  • 69.99
  • 69.43
  • 66.66
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
9.51e3
  • 9.51e3
  • 1.32e4
  • 1.34e4
  • 1.36e4
68.16
  • 68.16
  • 55.97
  • 54.97
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.59e3
  • 9.59e3
67.90
  • 67.90
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
1.03e4
  • 1.03e4
  • 1.15e4
  • 1.21e4
  • 1.23e4
  • 1.36e4
65.61
  • 65.61
  • 61.53
  • 59.36
  • 58.80
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
1.03e4
  • 1.03e4
65.37
  • 65.37
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.07e4
  • 1.07e4
  • 1.15e4
  • 1.18e4
  • 1.22e4
  • 1.23e4
  • 1.27e4
  • 1.27e4
64.26
  • 64.26
  • 61.34
  • 60.50
  • 59.06
  • 58.80
  • 57.47
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
  • 1.48e4
63.13
  • 63.13
  • 50.47
AEIR
  • AEIR
  • AEIR
UBERON:0005087tooth placode
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.16e4
  • 1.16e4
  • 1.18e4
61.09
  • 61.09
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.19e4
  • 1.19e4
  • 1.59e4
  • 1.75e4
60.13
  • 60.13
  • 46.82
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.29
  • 58.29
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.81
  • 55.81
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.57
  • 54.57
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
1.38e4
  • 1.38e4
  • 1.39e4
53.83
  • 53.83
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.40
  • 50.40
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
ZFA:0001065lateral mesoderm (Danio)
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.04
  • 47.04
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.18
  • 42.18
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.29
  • 39.29
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.68
  • 35.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.14
  • 32.14
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
29.95
  • 29.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000013057.

Cross-references

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