D. rerio Gene: ndrg3a - ENSDARG00000013087 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013087
Namendrg3a
Descriptionndrg family member 3a [Source:ZFIN;Acc:ZDB-GENE-980526-124]
OrganismDanio rerio (zebrafish)
Synonym(s)fc04h03, ndr3, ndrg3, wu:fc04h03, zgc:63551
Orthologs(s)19 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
75.1
  • 75.1
  • 2.88e3
  • 8.72e3
99.75
  • 99.75
  • 90.35
  • 70.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
329
  • 329
  • 513
98.90
  • 98.90
  • 98.29
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
483
  • 483
  • 7.36e3
  • 7.78e3
  • 1.01e4
98.39
  • 98.39
  • 75.35
  • 73.95
  • 66.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
561
  • 561
98.12
  • 98.12
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
651
  • 651
  • 1.16e3
  • 2.18e3
  • 2.33e3
  • 2.50e3
  • 2.96e3
  • 4.08e3
  • 4.43e3
  • 6.18e3
  • 6.46e3
97.82
  • 97.82
  • 96.12
  • 92.70
  • 92.21
  • 91.64
  • 90.09
  • 86.33
  • 85.17
  • 79.31
  • 78.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
769
  • 769
  • 1.65e3
  • 1.80e3
  • 3.25e3
  • 3.40e3
  • 3.76e3
  • 5.13e3
  • 8.60e3
  • 8.81e3
  • 1.13e4
  • 1.17e4
  • 1.19e4
  • 1.21e4
  • 1.27e4
  • 1.33e4
  • 1.47e4
97.43
  • 97.43
  • 94.48
  • 93.96
  • 89.11
  • 88.61
  • 87.41
  • 82.84
  • 71.22
  • 70.49
  • 62.14
  • 60.69
  • 60.25
  • 59.52
  • 57.49
  • 55.48
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
784
  • 784
97.38
  • 97.38
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
879
  • 879
  • 1.27e3
  • 1.55e3
97.06
  • 97.06
  • 95.75
  • 94.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.76e3
  • 1.76e3
94.12
  • 94.12
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.02e3
  • 2.02e3
93.25
  • 93.25
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.70
  • 91.70
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.69
  • 91.69
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.53e3
  • 2.53e3
91.53
  • 91.53
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
90.90
  • 90.90
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.89e3
  • 2.89e3
90.34
  • 90.34
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.50e3
  • 3.50e3
88.28
  • 88.28
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.55e3
  • 3.55e3
  • 3.66e3
88.11
  • 88.11
  • 87.74
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.71e3
  • 3.71e3
87.59
  • 87.59
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.52
  • 84.52
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.79e3
  • 4.79e3
83.95
  • 83.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
82.26
  • 82.26
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.58e3
  • 5.58e3
81.32
  • 81.32
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.21
  • 79.21
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.42e3
  • 6.42e3
  • 9.15e3
78.49
  • 78.49
  • 69.36
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
7.18e3
  • 7.18e3
  • 8.78e3
  • 1.07e4
  • 1.10e4
  • 1.26e4
75.96
  • 75.96
  • 70.62
  • 64.33
  • 63.28
  • 57.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
7.24e3
  • 7.24e3
  • 9.20e3
  • 1.04e4
  • 1.08e4
  • 1.11e4
  • 1.18e4
75.75
  • 75.75
  • 69.18
  • 65.13
  • 63.91
  • 62.67
  • 60.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.51e3
  • 7.51e3
74.87
  • 74.87
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.82e3
  • 7.82e3
73.80
  • 73.80
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.60e3
  • 8.60e3
71.20
  • 71.20
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.76e3
  • 8.76e3
70.67
  • 70.67
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.23e3
  • 9.23e3
69.11
  • 69.11
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.95e3
  • 9.95e3
66.69
  • 66.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.18
  • 64.18
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.50e4
55.82
  • 55.82
  • 49.94
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species18 genesCompare expression
Bilateria18 species19 genesCompare expression

Orthology information comes from OMA : ENSDARG00000013087.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Chordata5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000013087.

Cross-references

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