D. rerio Gene: dlx1a - ENSDARG00000013125 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013125
Namedlx1a
Descriptiondistal-less homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-990415-48]
OrganismDanio rerio (zebrafish)
Synonym(s)dlx1, q567k7, zgc:111939
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.69e3
  • 4.69e3
84.28
  • 84.28
AEIR
  • AEIR
UBERON:0004744articular/anguloarticular
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
  • 1.49e4
  • 1.49e4
83.34
  • 83.34
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.65e3
  • 5.65e3
  • 9.96e3
  • 1.53e4
81.07
  • 81.07
  • 66.67
  • 48.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
6.85e3
  • 6.85e3
  • 7.47e3
  • 7.86e3
  • 1.02e4
  • 1.08e4
  • 1.10e4
  • 1.12e4
77.07
  • 77.07
  • 74.99
  • 73.67
  • 65.77
  • 63.87
  • 63.14
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
6.87e3
  • 6.87e3
  • 7.43e3
  • 7.91e3
  • 8.72e3
  • 8.77e3
  • 8.92e3
  • 1.44e4
  • 1.47e4
77.02
  • 77.02
  • 75.14
  • 73.51
  • 70.81
  • 70.62
  • 70.15
  • 51.87
  • 50.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002397maxilla
  • ZFS:0000038Larval:Day 6
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2000422retroarticular
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2000692symplectic
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 9.96e3
  • 9.96e3
75.00
  • 75.00
  • 66.67
  • 66.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001280branchiostegal ray 3
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001900ventral thalamus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 8.53e3
  • 1.49e4
75.00
  • 75.00
  • 71.43
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 8.15e3
  • 8.30e3
  • 8.54e3
  • 1.09e4
  • 1.12e4
  • 1.16e4
74.99
  • 74.99
  • 72.72
  • 72.22
  • 71.42
  • 63.63
  • 62.49
  • 61.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.80e3
  • 7.80e3
73.90
  • 73.90
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000026Segmentation:14-19 somites
7.97e3
  • 7.97e3
73.32
  • 73.32
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.04e3
  • 8.04e3
  • 8.71e3
  • 8.71e3
  • 8.71e3
  • 9.51e3
  • 1.05e4
  • 1.05e4
73.07
  • 73.07
  • 70.82
  • 70.82
  • 70.82
  • 68.17
  • 64.99
  • 64.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
8.72e3
  • 8.72e3
  • 9.51e3
  • 9.96e3
  • 1.04e4
  • 1.10e4
  • 1.10e4
  • 1.14e4
70.81
  • 70.81
  • 68.16
  • 66.65
  • 65.19
  • 63.14
  • 63.02
  • 61.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.78e3
  • 8.78e3
  • 1.02e4
  • 1.13e4
70.61
  • 70.61
  • 65.80
  • 62.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
8.79e3
  • 8.79e3
  • 9.19e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
  • 1.03e4
  • 1.03e4
70.57
  • 70.57
  • 69.22
  • 67.85
  • 67.85
  • 66.65
  • 65.61
  • 65.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.60e3
  • 9.60e3
  • 1.17e4
67.85
  • 67.85
  • 60.66
AEIR
  • AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.19e4
66.67
  • 66.67
  • 66.67
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011606hyomandibular bone
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.84
  • 65.84
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
1.18e4
  • 1.18e4
  • 1.19e4
  • 1.29e4
  • 1.31e4
  • 1.42e4
  • 1.50e4
  • 1.57e4
  • 1.68e4
60.58
  • 60.58
  • 60.14
  • 56.84
  • 55.99
  • 52.31
  • 49.80
  • 47.41
  • 43.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.37e4
60.43
  • 60.43
  • 54.23
AEIR
  • AEIR
  • AEIR
UBERON:0001928preoptic area
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:2001281branchiostegal ray 2
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000204ventral part of telencephalon
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004742dentary
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2000250opercle
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
2.20e4
  • 2.20e4
26.26
  • 26.26
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.17
  • 22.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000013125 (dlx1a)
ZFINZDB-GENE-990415-48 (dlx1a)
EMBLBC093139, U67842
Uniprot/SWISSPROTDLX1A_DANRE, Q98875

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