D. rerio Gene: zgc:172271 - ENSDARG00000013240 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013240
Namezgc:172271
Descriptionzgc:172271 [Source:ZFIN;Acc:ZDB-GENE-080204-110]
OrganismDanio rerio (zebrafish)
Orthologs(s)3 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.50e3
  • 8.50e3
  • 1.96e4
71.53
  • 71.53
  • 34.26
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.88e3
  • 9.88e3
66.93
  • 66.93
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.94e3
  • 9.94e3
66.73
  • 66.73
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.56
  • 61.56
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.38
  • 61.38
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.21e4
  • 1.21e4
59.65
  • 59.65
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.89
  • 56.89
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.33e4
  • 1.33e4
  • 1.59e4
55.58
  • 55.58
  • 46.64
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.77
  • 54.77
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.42e4
  • 1.42e4
  • 2.21e4
52.37
  • 52.37
  • 26.11
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.66
  • 51.66
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.38
  • 48.38
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.60
  • 45.60
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.05
  • 45.05
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
1.70e4
  • 1.70e4
  • 2.19e4
  • 2.22e4
42.93
  • 42.93
  • 26.51
  • 25.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.45
  • 42.45
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.77e4
  • 1.77e4
40.88
  • 40.88
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
36.91
  • 36.91
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.13
  • 36.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Orthology information comes from OMA : ENSDARG00000013240.

Cross-references

EnsemblENSDARG00000013240 (zgc:172271)
ZFINZDB-GENE-080204-110 (zgc:172271)
EMBLCR293534, CR847954
Uniprot/SPTREMBLF1R9Z0, F1R9Z0_DANRE

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