D. rerio Gene: TMC5 - ENSDARG00000013252 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013252
NameTMC5
Descriptionsi:dkey-202l16.5 [Source:ZFIN;Acc:ZDB-GENE-120411-6]
OrganismDanio rerio (zebrafish)
Synonym(s)flj13593, unm_sa506
Orthologs(s)2 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.46e3
  • 2.46e3
91.77
  • 91.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.71e3
  • 2.71e3
90.94
  • 90.94
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.58e3
  • 8.58e3
71.27
  • 71.27
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.95e3
  • 8.95e3
70.03
  • 70.03
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.97
  • 62.97
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.13e4
  • 1.13e4
  • 1.74e4
62.03
  • 62.03
  • 41.63
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.27
  • 59.27
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.35
  • 54.35
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.84
  • 53.84
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.89
  • 51.89
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.51e4
  • 1.51e4
  • 1.71e4
49.45
  • 49.45
  • 42.61
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.03
  • 47.03
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.61e4
  • 1.61e4
  • 1.76e4
  • 1.79e4
  • 1.85e4
  • 1.92e4
46.01
  • 46.01
  • 41.03
  • 40.17
  • 38.17
  • 35.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.62e4
  • 1.62e4
  • 1.70e4
45.72
  • 45.72
  • 43.09
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.71e4
  • 1.71e4
42.75
  • 42.75
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.75
  • 39.75
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.36
  • 39.36
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.62
  • 38.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000013252.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000013252.

Cross-references

EnsemblENSDARG00000013252 (TMC5)
HGNCHGNC:22999 (TMC5)
ZFINZDB-GENE-120411-6 (si:dkey-202l16.5)
EMBLBX470132, CR847568
Uniprot/SPTREMBLE7FDU7, E7FDU7_DANRE

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