D. rerio Gene: cirbpb - ENSDARG00000013351 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013351
Namecirbpb
Descriptioncold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841]
OrganismDanio rerio (zebrafish)
Synonym(s)cirbp, wu:fb12c11, wu:fi20g12, zgc:136559
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
5.68
  • 5.68
  • 7.04
  • 11.9
  • 17.2
  • 18.7
  • 81.9
99.98
  • 99.98
  • 99.98
  • 99.96
  • 99.95
  • 99.94
  • 99.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
12.0
  • 12.0
  • 32.5
  • 56.0
  • 241
  • 457
99.96
  • 99.96
  • 99.89
  • 99.82
  • 99.19
  • 98.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
20.5
  • 20.5
99.93
  • 99.93
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
22.3
  • 22.3
  • 31.0
  • 40.2
  • 77.3
  • 77.7
  • 99.2
  • 110
  • 119
  • 134
  • 144
99.93
  • 99.93
  • 99.90
  • 99.87
  • 99.74
  • 99.74
  • 99.67
  • 99.63
  • 99.61
  • 99.56
  • 99.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
31.2
  • 31.2
  • 32.3
  • 32.3
  • 33.3
  • 69.0
  • 77.4
  • 151
  • 193
  • 198
  • 201
  • 234
  • 310
  • 317
  • 343
99.90
  • 99.90
  • 99.90
  • 99.90
  • 99.89
  • 99.77
  • 99.74
  • 99.50
  • 99.36
  • 99.34
  • 99.33
  • 99.22
  • 98.96
  • 98.94
  • 98.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
38.8
  • 38.8
  • 48.6
  • 78.9
  • 1.40e3
99.87
  • 99.87
  • 99.84
  • 99.74
  • 95.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
42.0
  • 42.0
99.86
  • 99.86
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
52.7
  • 52.7
99.83
  • 99.83
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
58.5
  • 58.5
99.81
  • 99.81
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
60.0
  • 60.0
  • 171
99.80
  • 99.80
  • 99.43
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
62.0
  • 62.0
99.80
  • 99.80
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
87.3
  • 87.3
99.71
  • 99.71
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
117
  • 117
99.61
  • 99.61
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
119
  • 119
  • 127
99.61
  • 99.61
  • 99.58
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
120
  • 120
99.60
  • 99.60
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
128
  • 128
99.57
  • 99.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
144
  • 144
99.52
  • 99.52
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
154
  • 154
99.49
  • 99.49
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
161
  • 161
99.46
  • 99.46
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
163
  • 163
  • 229
99.46
  • 99.46
  • 99.24
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
173
  • 173
99.42
  • 99.42
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
174
  • 174
99.42
  • 99.42
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
175
  • 175
  • 307
99.42
  • 99.42
  • 98.97
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
177
  • 177
99.41
  • 99.41
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
186
  • 186
99.38
  • 99.38
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
187
  • 187
  • 189
  • 220
99.38
  • 99.38
  • 99.37
  • 99.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
198
  • 198
99.34
  • 99.34
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
208
  • 208
99.31
  • 99.31
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
235
  • 235
99.22
  • 99.22
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
240
  • 240
99.20
  • 99.20
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
248
  • 248
99.17
  • 99.17
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
722
  • 722
97.59
  • 97.59
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000013351.

Cross-references

EnsemblENSDARG00000013351 (cirbpb)
ZFINZDB-GENE-030131-5841 (cirbpb)
EMBLBX649404
Uniprot/SPTREMBLE7EYX7, E7EYX7_DANRE, F1QPW8, F1QPW8_DANRE, F1R6L3, F1R6L3_DANRE, F1R6L4, F1R6L4_DANRE

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