D. rerio Gene: GABRA4 - ENSDARG00000013389 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013389
NameGABRA4
Descriptionzgc:110204 [Source:ZFIN;Acc:ZDB-GENE-050417-360]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.07405
  • 88.07405
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
3.70e3
  • 3.70e3
  • 1.01e4
  • 1.05e4
  • 1.07e4
  • 1.07e4
  • 1.09e4
  • 1.09e4
  • 1.11e4
87.50001
  • 87.50001
  • 65.77088
  • 64.55799
  • 63.87031
  • 63.87031
  • 63.13761
  • 63.13761
  • 62.48309
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.69e3
  • 5.69e3
80.76417
  • 80.76417
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000037Larval:Day 5
7.40e3
  • 7.40e3
74.99660
  • 74.99660
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000026Segmentation:14-19 somites
7.89e3
  • 7.89e3
73.32320
  • 73.32320
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000037Larval:Day 5
8.46e3
  • 8.46e3
71.42518
  • 71.42518
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.03e4
  • 1.03e4
  • 1.08e4
65.19372
  • 65.19372
  • 63.61269
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.03e4
  • 1.03e4
  • 1.13e4
  • 1.14e4
65.19372
  • 65.19372
  • 61.88109
  • 61.63118
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.04e4
  • 1.04e4
  • 1.09e4
64.97970
  • 64.97970
  • 63.13761
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.06e4
  • 1.06e4
  • 1.11e4
  • 1.11e4
64.25529
  • 64.25529
  • 62.47802
  • 62.47802
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.11e4
  • 1.11e4
  • 1.11e4
62.48309
  • 62.48309
  • 62.48309
AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.11e4
  • 1.11e4
  • 1.11e4
  • 1.14e4
62.47802
  • 62.47802
  • 62.47802
  • 61.33828
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
46.78140
  • 46.78140
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
1.65e4
  • 1.65e4
  • 2.30e4
  • 2.37e4
  • 2.63e4
44.08480
  • 44.08480
  • 22.13679
  • 19.75056
  • 11.25290
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000013389 (GABRA4)
HGNCHGNC:4078 (GABRA4)
Uniprot/SPTREMBLF1RB35, F1RB35_DANRE
ZFINZDB-GENE-050417-360 (zgc:110204)

Do not show this banner again