D. rerio Gene: lmna - ENSDARG00000013415 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013415
Namelmna
Descriptionlamin A [Source:ZFIN;Acc:ZDB-GENE-020424-3]
OrganismDanio rerio (zebrafish)
Synonym(s)cb948, fk66d12, wu:fk66d12
Orthologs(s)29 orthologs
Paralog(s)50 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
456
  • 456
  • 714
98.48
  • 98.48
  • 97.61
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.06e3
  • 1.06e3
96.46
  • 96.46
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.42e3
  • 1.42e3
  • 1.74e4
95.26
  • 95.26
  • 41.58
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.16
  • 93.16
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.29e3
  • 2.29e3
92.32
  • 92.32
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.39
  • 91.39
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.68
  • 90.68
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:00072322 cell stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.28e3
  • 3.28e3
  • 6.22e3
  • 6.40e3
  • 6.72e3
  • 6.79e3
  • 6.82e3
  • 7.01e3
  • 7.21e3
  • 7.21e3
  • 7.26e3
  • 7.27e3
  • 7.33e3
  • 7.47e3
  • 7.60e3
  • 1.01e4
89.00
  • 89.00
  • 79.19
  • 78.57
  • 77.50
  • 77.27
  • 77.16
  • 76.52
  • 75.87
  • 75.86
  • 75.68
  • 75.67
  • 75.45
  • 74.99
  • 74.55
  • 66.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.64e3
  • 3.64e3
87.83
  • 87.83
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.26
  • 87.26
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
85.55
  • 85.55
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
5.16e3
  • 5.16e3
  • 8.47e3
  • 1.42e4
82.72
  • 82.72
  • 71.65
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.29e3
  • 5.29e3
  • 5.45e3
  • 5.90e3
  • 6.21e3
  • 6.99e3
  • 7.66e3
82.29
  • 82.29
  • 81.77
  • 80.25
  • 79.20
  • 76.61
  • 74.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
82.00
  • 82.00
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.43e3
  • 5.43e3
  • 5.44e3
  • 5.74e3
  • 6.12e3
  • 6.41e3
  • 7.21e3
  • 7.71e3
  • 7.76e3
  • 1.02e4
  • 1.36e4
81.82
  • 81.82
  • 81.80
  • 80.79
  • 79.50
  • 78.55
  • 75.84
  • 74.18
  • 74.02
  • 65.75
  • 54.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.90e3
  • 5.90e3
80.24
  • 80.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.02e3
  • 6.02e3
79.83
  • 79.83
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
6.85e3
  • 6.85e3
  • 8.04e3
  • 9.70e3
77.08
  • 77.08
  • 73.08
  • 67.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.39e3
  • 7.39e3
75.25
  • 75.25
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
7.72e3
  • 7.72e3
  • 8.83e3
  • 1.22e4
74.15
  • 74.15
  • 70.43
  • 59.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.11e3
  • 8.11e3
  • 8.58e3
72.83
  • 72.83
  • 71.27
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.24e3
  • 8.24e3
  • 1.20e4
  • 1.20e4
  • 1.25e4
72.40
  • 72.40
  • 59.98
  • 59.98
  • 58.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.38e3
  • 8.38e3
  • 1.20e4
  • 1.40e4
71.94
  • 71.94
  • 59.98
  • 53.19
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.34e3
  • 9.34e3
  • 9.67e3
  • 9.96e3
  • 9.96e3
68.74
  • 68.74
  • 67.63
  • 66.65
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011611ceratohyal bone
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
66.65
  • 66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.43
  • 66.43
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.02
  • 64.02
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.10
  • 63.10
AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.16e4
  • 1.16e4
  • 1.18e4
61.09
  • 61.09
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.18e4
60.50
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.31e4
  • 1.31e4
56.06
  • 56.06
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.00
  • 55.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.84
  • 52.84
AEIR
  • AEIR
UBERON:0014892skeletal muscle organ
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000250opercle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species29 genesCompare expression

Orthology information comes from OMA : ENSDARG00000013415.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Eumetazoa3 genesCompare expression
Opisthokonta50 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000013415.

Cross-references

Do not show this banner again