D. rerio Gene: sycp3 - ENSDARG00000013438 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013438
Namesycp3
Descriptionsynaptonemal complex protein 3 [Source:ZFIN;Acc:ZDB-GENE-040910-2]
OrganismDanio rerio (zebrafish)
Synonym(s)sycp3l, sycp3l {eco:0000313|embl:aai15344.1,gn eco:0000313|zfin:zdb-gene-040910-2}, zgc:136951
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • ZFS:0000041Larval:Days 21-29
195
  • 195
  • 7.47e3
99.35
  • 99.35
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000041Larval:Days 21-29
  • UBERON:0000066fully formed stage
4.98e3
  • 4.98e3
  • 7.47e3
  • 1.36e4
83.34
  • 83.34
  • 75.00
  • 54.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.31e3
  • 5.31e3
82.23
  • 82.23
AEIR
  • AEIR
CL:0000039germ line cell
  • ZFS:0000040Larval:Days 14-20
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.72e3
  • 9.72e3
67.46
  • 67.46
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.67
  • 63.67
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.17e4
  • 1.17e4
60.66
  • 60.66
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.26
  • 58.26
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.32e4
  • 1.32e4
  • 1.39e4
55.67
  • 55.67
  • 53.36
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.53e4
  • 1.53e4
48.70
  • 48.70
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.53
  • 48.53
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.62e4
  • 1.62e4
  • 1.67e4
45.75
  • 45.75
  • 44.22
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
44.98
  • 44.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.48
  • 44.48
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.72e4
  • 1.72e4
42.37
  • 42.37
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.74e4
  • 1.74e4
  • 1.78e4
  • 2.19e4
  • 2.30e4
41.71
  • 41.71
  • 40.55
  • 26.81
  • 23.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.13
  • 39.13
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.82
  • 38.82
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
30.97
  • 30.97
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.20e4
  • 2.20e4
  • 2.29e4
26.42
  • 26.42
  • 23.42
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000013438 (sycp3)
ZFINZDB-GENE-040910-2 (sycp3)
EMBLBC115343, CR385081
Uniprot/SPTREMBLE9QGA1, E9QGA1_DANRE, Q1RLP7, Q1RLP7_DANRE

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