D. rerio Gene: ube2kb - ENSDARG00000013505 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013505
Nameube2kb
Descriptionubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-980605-9]
OrganismDanio rerio (zebrafish)
Synonym(s)hip2, ube2k, ube2kgn, zgc:103472
Orthologs(s)28 orthologs
Paralog(s)25 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.87e3
  • 1.87e3
  • 2.94e3
  • 3.52e3
  • 4.94e3
93.75
  • 93.75
  • 90.15
  • 88.20
  • 83.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.46e3
  • 2.46e3
  • 5.53e3
91.76
  • 91.76
  • 81.49
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.73e3
  • 2.73e3
90.85
  • 90.85
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
2.80e3
  • 2.80e3
  • 3.58e3
  • 8.21e3
  • 1.31e4
  • 1.32e4
90.64
  • 90.64
  • 88.02
  • 72.51
  • 56.19
  • 55.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.03e3
  • 3.03e3
89.86
  • 89.86
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.08
  • 89.08
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.33e3
  • 3.33e3
88.84
  • 88.84
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
3.37e3
  • 3.37e3
  • 3.49e3
  • 4.41e3
  • 4.65e3
  • 4.80e3
  • 4.83e3
  • 5.36e3
  • 5.39e3
  • 5.53e3
  • 5.63e3
  • 5.79e3
  • 6.59e3
  • 7.05e3
  • 7.47e3
88.71
  • 88.71
  • 88.32
  • 85.24
  • 84.43
  • 83.92
  • 83.83
  • 82.04
  • 81.94
  • 81.47
  • 81.16
  • 80.60
  • 77.95
  • 76.39
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.50e3
  • 3.50e3
88.29
  • 88.29
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
3.66e3
  • 3.66e3
  • 3.87e3
  • 4.32e3
  • 4.56e3
  • 4.85e3
  • 4.95e3
  • 5.17e3
  • 7.43e3
  • 7.83e3
  • 7.84e3
87.75
  • 87.75
  • 87.03
  • 85.54
  • 84.74
  • 83.78
  • 83.43
  • 82.68
  • 75.12
  • 73.79
  • 73.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
3.72e3
  • 3.72e3
  • 5.06e3
  • 6.31e3
  • 7.11e3
  • 7.92e3
  • 8.63e3
87.54
  • 87.54
  • 83.06
  • 78.87
  • 76.18
  • 73.49
  • 71.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
87.28
  • 87.28
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.86e3
  • 3.86e3
87.09
  • 87.09
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
  • 4.76e3
86.95
  • 86.95
  • 84.05
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.99e3
  • 3.99e3
86.65
  • 86.65
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.14e3
  • 4.14e3
  • 4.56e3
86.15
  • 86.15
  • 84.73
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
85.80
  • 85.80
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.25e3
  • 4.25e3
85.77
  • 85.77
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.34e3
  • 4.34e3
  • 4.68e3
  • 5.33e3
85.47
  • 85.47
  • 84.34
  • 82.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
85.26
  • 85.26
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.44e3
  • 4.44e3
85.13
  • 85.13
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.49e3
  • 4.49e3
84.97
  • 84.97
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.68e3
  • 4.68e3
84.33
  • 84.33
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.04
  • 84.04
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.82e3
  • 4.82e3
83.86
  • 83.86
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.24e3
  • 5.24e3
82.44
  • 82.44
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.45e3
  • 5.45e3
81.75
  • 81.75
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.63e3
  • 5.63e3
81.14
  • 81.14
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.75e3
  • 5.75e3
80.76
  • 80.76
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.44e3
  • 6.44e3
78.45
  • 78.45
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.61e3
  • 7.61e3
74.51
  • 74.51
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.86e3
  • 7.86e3
73.68
  • 73.68
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.04e4
  • 1.04e4
65.07
  • 65.07
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.20e4
60.50
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria23 species28 genesCompare expression

Orthology information comes from OMA : ENSDARG00000013505.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000013505 (ube2kb)
ZFINZDB-GENE-980605-9 (ube2kb)
EMBLBC086816, BC154174, BC165002, CR759875
Uniprot/SPTREMBLQ5PR60, Q5PR60_DANRE

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